Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pemIK/PRK09812-ChpS
Location 826644..827233 Replicon chromosome
Accession NZ_CP119409
Organism Rhizobium gei strain ZFJT.2T

Toxin (Protein)


Gene name pemK Uniprot ID -
Locus tag PY308_RS03875 Protein ID WP_275788361.1
Coordinates 826644..826973 (-) Length 110 a.a.

Antitoxin (Protein)


Gene name pemI Uniprot ID -
Locus tag PY308_RS03880 Protein ID WP_275788365.1
Coordinates 826973..827233 (-) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PY308_RS03855 822298..822723 + 426 WP_275788352.1 DUF4174 domain-containing protein -
PY308_RS03860 822776..824989 - 2214 WP_275788355.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein -
PY308_RS03865 825011..825388 - 378 WP_275788356.1 cupin domain-containing protein -
PY308_RS03870 825393..826601 - 1209 WP_275788358.1 acetyl-CoA C-acetyltransferase -
PY308_RS03875 826644..826973 - 330 WP_275788361.1 type II toxin-antitoxin system PemK/MazF family toxin Toxin
PY308_RS03880 826973..827233 - 261 WP_275788365.1 antitoxin Antitoxin
PY308_RS03885 827294..829090 - 1797 WP_275788368.1 acyl-CoA dehydrogenase C-terminal domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(1-107)

Antitoxin

Antitoxin PemI-like

(5-84)


Sequences

Toxin        


Download         Length: 110 a.a.        Molecular weight: 11942.75 Da        Isoelectric Point: 10.4532

>T274126 WP_275788361.1 NZ_CP119409:c826973-826644 [Rhizobium gei]
MERGDIWFADLEPTRGHEQAKSRYCLIVSQGNFNRLGLQFIAPITIGGNFARAKGFSVSLSGAGTRTSGVILCHQVRAID
VKARGGRFIEKAPPFITAEVLARISTFFE

Download         Length: 330 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9397.76 Da        Isoelectric Point: 3.9285

>AT274126 WP_275788365.1 NZ_CP119409:c827233-826973 [Rhizobium gei]
MASSTLRNAGGSVIMTVPKPVLDELGLQANTTVDVMAVDGKMVVAAQKRPKYTLEELLAQCDFDAPWSEEELEWMNMPSV
GNEIID

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References