Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 8838..9469 Replicon chromosome
Accession NZ_CP119409
Organism Rhizobium gei strain ZFJT.2T

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PY308_RS00055 Protein ID WP_275786631.1
Coordinates 8838..9224 (-) Length 129 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag PY308_RS00060 Protein ID WP_275786633.1
Coordinates 9221..9469 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PY308_RS00030 4385..4729 - 345 WP_275786617.1 transcriptional regulator -
PY308_RS00035 4838..5458 - 621 WP_275786620.1 response regulator FixJ -
PY308_RS00040 5445..6926 - 1482 WP_275786623.1 PAS domain S-box protein -
PY308_RS00045 7134..7580 - 447 WP_275786625.1 pseudoazurin -
PY308_RS00050 7777..8835 - 1059 WP_275786628.1 site-specific integrase -
PY308_RS00055 8838..9224 - 387 WP_275786631.1 type II toxin-antitoxin system VapC family toxin Toxin
PY308_RS00060 9221..9469 - 249 WP_275786633.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
PY308_RS00065 9732..11501 - 1770 WP_275786636.1 calcium-binding protein -
PY308_RS00070 11660..11989 - 330 WP_275786637.1 hypothetical protein -
PY308_RS00075 12149..13048 + 900 WP_275786639.1 LysR family transcriptional regulator -
PY308_RS00080 13343..13825 + 483 WP_275786642.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-124)

Antitoxin

Antitoxin VapB-like

(2-81)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 13956.80 Da        Isoelectric Point: 4.9152

>T274125 WP_275786631.1 NZ_CP119409:c9224-8838 [Rhizobium gei]
MIVDTSALVAILYREAEAASFVERIHEAETARISVANYVELSMVVESQLGSNGMRQAEAFFRRAGIIIEPVTVEHGELAR
QAFLDFGKGRHKASLNFGDCFAYALAKASGEPLLFKGNDFSQTDVQAA

Download         Length: 387 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9125.34 Da        Isoelectric Point: 7.4028

>AT274125 WP_275786633.1 NZ_CP119409:c9469-9221 [Rhizobium gei]
VSLSIKDPEAHRLAQAISHATGESMTRVVTEALRERFAKLERRKGRATVEELLAIADRAAAHVKSPYVDHADFLYDENGI
PK

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References