Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1996738..1997009 | Replicon | chromosome |
| Accession | NZ_CP119400 | ||
| Organism | Escherichia coli strain MRE162 substr. NOR | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1996868..1996971 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1996738..1997009 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PX809_RS09625 | 1993293..1993955 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| PX809_RS09630 | 1993979..1994635 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PX809_RS09635 | 1994737..1994967 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PX809_RS09640 | 1995106..1995480 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PX809_RS09645 | 1995484..1996356 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| PX809_RS09650 | 1996369..1996710 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1996738..1997009 | - | 272 | - | - | Antitoxin |
| - | 1996868..1996971 | + | 104 | - | - | Toxin |
| PX809_RS09655 | 1997106..1997762 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| PX809_RS09660 | 1997763..1997954 | - | 192 | WP_001338167.1 | YebW family protein | - |
| PX809_RS09665 | 1998059..1998295 | - | 237 | WP_001338166.1 | YebV family protein | - |
| PX809_RS09670 | 1998413..1999852 | - | 1440 | WP_063091473.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T274062 NZ_CP119400:1996868-1996971 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT274062 NZ_CP119400:c1997009-1996738 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
