Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1543064..1543209 | Replicon | chromosome |
| Accession | NZ_CP119332 | ||
| Organism | Klebsiella pneumoniae strain CQ22WZ0036 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1543100..1543202 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1543064..1543209 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OMP07_RS07605 (OMP07_07605) | 1538194..1540254 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| OMP07_RS07610 (OMP07_07610) | 1540258..1540917 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| OMP07_RS07615 (OMP07_07615) | 1540996..1541226 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| OMP07_RS07620 (OMP07_07620) | 1541339..1541713 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| OMP07_RS07625 (OMP07_07625) | 1541717..1542586 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| OMP07_RS07630 (OMP07_07630) | 1542603..1542941 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1543064..1543209 | - | 146 | - | - | Antitoxin |
| - | 1543100..1543202 | + | 103 | - | - | Toxin |
| OMP07_RS07635 (OMP07_07635) | 1543577..1543720 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| OMP07_RS07640 (OMP07_07640) | 1543825..1544793 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| OMP07_RS07645 (OMP07_07645) | 1544950..1545603 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| OMP07_RS07650 (OMP07_07650) | 1545600..1545791 | - | 192 | WP_002911395.1 | YebW family protein | - |
| OMP07_RS07655 (OMP07_07655) | 1545889..1546128 | - | 240 | WP_002911393.1 | YebV family protein | - |
| OMP07_RS07660 (OMP07_07660) | 1546244..1547677 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T273957 NZ_CP119332:1543100-1543202 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT273957 NZ_CP119332:c1543209-1543064 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
