Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2011577..2011722 | Replicon | chromosome |
| Accession | NZ_CP119174 | ||
| Organism | Klebsiella pneumoniae strain X-CRHVKP-130 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2011613..2011715 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2011577..2011722 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PY995_RS09870 (PY995_09870) | 2006707..2008767 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| PY995_RS09875 (PY995_09875) | 2008771..2009430 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| PY995_RS09880 (PY995_09880) | 2009509..2009739 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| PY995_RS09885 (PY995_09885) | 2009852..2010226 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| PY995_RS09890 (PY995_09890) | 2010230..2011099 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| PY995_RS09895 (PY995_09895) | 2011116..2011454 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2011577..2011722 | - | 146 | - | - | Antitoxin |
| - | 2011613..2011715 | + | 103 | - | - | Toxin |
| PY995_RS09900 (PY995_09900) | 2012090..2012233 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| PY995_RS09905 (PY995_09905) | 2012338..2013306 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| PY995_RS09910 (PY995_09910) | 2013463..2014116 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| PY995_RS09915 (PY995_09915) | 2014113..2014304 | - | 192 | WP_002911395.1 | YebW family protein | - |
| PY995_RS09920 (PY995_09920) | 2014402..2014641 | - | 240 | WP_002911393.1 | YebV family protein | - |
| PY995_RS09925 (PY995_09925) | 2014757..2016190 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T273890 NZ_CP119174:2011613-2011715 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT273890 NZ_CP119174:c2011722-2011577 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
