Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | hicAB/UPF0150(antitoxin) |
Location | 2423667..2424306 | Replicon | chromosome |
Accession | NZ_CP119165 | ||
Organism | Citrobacter freundii strain 2075 |
Toxin (Protein)
Gene name | hicA | Uniprot ID | - |
Locus tag | P0S03_RS11955 | Protein ID | WP_071684398.1 |
Coordinates | 2423667..2423843 (+) | Length | 59 a.a. |
Antitoxin (Protein)
Gene name | hicB | Uniprot ID | - |
Locus tag | P0S03_RS11960 | Protein ID | WP_123924900.1 |
Coordinates | 2423890..2424306 (+) | Length | 139 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
P0S03_RS11935 (2420445) | 2420445..2420675 | - | 231 | WP_003020233.1 | DUF2554 family protein | - |
P0S03_RS11940 (2420865) | 2420865..2420990 | - | 126 | WP_003020230.1 | DUF2474 domain-containing protein | - |
P0S03_RS11945 (2420990) | 2420990..2422000 | - | 1011 | WP_003020227.1 | cytochrome d ubiquinol oxidase subunit II | - |
P0S03_RS11950 (2422000) | 2422000..2423403 | - | 1404 | WP_003020224.1 | cytochrome ubiquinol oxidase subunit I | - |
P0S03_RS11955 (2423667) | 2423667..2423843 | + | 177 | WP_071684398.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
P0S03_RS11960 (2423890) | 2423890..2424306 | + | 417 | WP_123924900.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
P0S03_RS11965 (2424399) | 2424399..2425808 | + | 1410 | WP_172750337.1 | PLP-dependent aminotransferase family protein | - |
P0S03_RS11970 (2426137) | 2426137..2427282 | + | 1146 | WP_061548295.1 | ABC transporter substrate-binding protein | - |
P0S03_RS11975 (2427299) | 2427299..2428315 | + | 1017 | WP_003020210.1 | ABC transporter ATP-binding protein | - |
P0S03_RS11980 (2428316) | 2428316..2429260 | + | 945 | WP_003843727.1 | ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 59 a.a. Molecular weight: 6768.86 Da Isoelectric Point: 11.6208
>T273876 WP_071684398.1 NZ_CP119165:2423667-2423843 [Citrobacter freundii]
VKQSKFRRWLESQGVAVTNGSNHLKLRYQGRRSVMPRHPGDEIKEALRKAIIKQLDLQ
VKQSKFRRWLESQGVAVTNGSNHLKLRYQGRRSVMPRHPGDEIKEALRKAIIKQLDLQ
Download Length: 177 bp
Antitoxin
Download Length: 139 a.a. Molecular weight: 15126.36 Da Isoelectric Point: 4.5716
>AT273876 WP_123924900.1 NZ_CP119165:2423890-2424306 [Citrobacter freundii]
MRYPVTLTPAVEGGFVVSFPDIPEALTQGNTRHDALQAAQAALITAFEFYFDDNEAIPLPSAVSAEDDYVEIPLSVASKV
LLLNAFLESKITQQELANRIGRPKQEITRLFDLKHTTKIDAVQIAARALGKELALTML
MRYPVTLTPAVEGGFVVSFPDIPEALTQGNTRHDALQAAQAALITAFEFYFDDNEAIPLPSAVSAEDDYVEIPLSVASKV
LLLNAFLESKITQQELANRIGRPKQEITRLFDLKHTTKIDAVQIAARALGKELALTML
Download Length: 417 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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