Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2075686..2075829 | Replicon | chromosome |
| Accession | NZ_CP119165 | ||
| Organism | Citrobacter freundii strain 2075 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2075721..2075824 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2075686..2075829 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P0S03_RS10140 | 2071858..2072244 | + | 387 | WP_172750526.1 | hypothetical protein | - |
| P0S03_RS10145 | 2072407..2073042 | - | 636 | WP_225990727.1 | hypothetical protein | - |
| P0S03_RS10150 | 2073054..2073299 | - | 246 | WP_115454751.1 | hypothetical protein | - |
| P0S03_RS10155 | 2073490..2073699 | + | 210 | WP_115454752.1 | hypothetical protein | - |
| P0S03_RS10160 | 2073956..2074330 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| P0S03_RS10165 | 2074334..2075206 | + | 873 | WP_003034931.1 | copper homeostasis membrane protein CopD | - |
| P0S03_RS10170 | 2075227..2075565 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2075686..2075829 | - | 144 | - | - | Antitoxin |
| - | 2075721..2075824 | + | 104 | - | - | Toxin |
| P0S03_RS10175 | 2075971..2076612 | + | 642 | WP_016150398.1 | protein-serine/threonine phosphatase | - |
| P0S03_RS10180 | 2076613..2076804 | - | 192 | WP_003034941.1 | YebW family protein | - |
| P0S03_RS10185 | 2076907..2077143 | - | 237 | WP_029139506.1 | YebV family protein | - |
| P0S03_RS10190 | 2077244..2078665 | - | 1422 | WP_086529330.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1999420..2078665 | 79245 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273872 NZ_CP119165:2075721-2075824 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT273872 NZ_CP119165:c2075829-2075686 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
