Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 3774022..3774467 Replicon chromosome
Accession NZ_CP119127
Organism Sphingobium sp. WTD-1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag N6H05_RS18590 Protein ID WP_161731919.1
Coordinates 3774189..3774467 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag N6H05_RS18585 Protein ID WP_010336649.1
Coordinates 3774022..3774192 (+) Length 57 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
N6H05_RS18575 (N6H05_18575) 3769299..3772214 + 2916 WP_284111059.1 excinuclease ABC subunit UvrA -
N6H05_RS18580 (N6H05_18580) 3772327..3773727 - 1401 WP_284111061.1 reverse transcriptase domain-containing protein -
N6H05_RS18585 (N6H05_18585) 3774022..3774192 + 171 WP_010336649.1 hypothetical protein Antitoxin
N6H05_RS18590 (N6H05_18590) 3774189..3774467 + 279 WP_161731919.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
N6H05_RS18595 (N6H05_18595) 3774605..3775801 + 1197 WP_284111065.1 hypothetical protein -
N6H05_RS18600 (N6H05_18600) 3775913..3776128 + 216 WP_037512246.1 cold-shock protein -
N6H05_RS18605 (N6H05_18605) 3776176..3776778 - 603 WP_037491660.1 hypothetical protein -
N6H05_RS18610 (N6H05_18610) 3776915..3777121 + 207 WP_004207728.1 hypothetical protein -
N6H05_RS18615 (N6H05_18615) 3777301..3777684 + 384 WP_284111070.1 glycine zipper 2TM domain-containing protein -
N6H05_RS18620 (N6H05_18620) 3777742..3778674 - 933 WP_284111072.1 FAD-binding protein -
N6H05_RS18625 (N6H05_18625) 3778671..3779420 - 750 WP_279776230.1 electron transfer flavoprotein subunit beta/FixA family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-91)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10439.93 Da        Isoelectric Point: 6.9872

>T273809 WP_161731919.1 NZ_CP119127:3774189-3774467 [Sphingobium sp. WTD-1]
MTLPVVWDDEAETALLTILDYIGPRNKTAAERLYAAIRHTADNLPNHPYAHRPGRTPGTREAVVHPNYILIYRVGIEAIE
ILTLVHARQQYP

Download         Length: 279 bp

Antitoxin


Download         Length: 57 a.a.        Molecular weight: 6238.14 Da        Isoelectric Point: 7.2019

>AT273809 WP_010336649.1 NZ_CP119127:3774022-3774192 [Sphingobium sp. WTD-1]
MTKLTPIESEFATTEDAEAHDAWVRAKVERALASTKPRIPHDAVMAKAQAVLDKYK

Download         Length: 171 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References