Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2671267..2671538 | Replicon | chromosome |
| Accession | NZ_CP119120 | ||
| Organism | Escherichia coli strain GENOMIC22-004 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2671305..2671408 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2671267..2671538 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYZ88_RS13070 | 2668424..2669863 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PYZ88_RS13075 | 2669981..2670217 | + | 237 | WP_001295499.1 | YebV family protein | - |
| PYZ88_RS13080 | 2670322..2670513 | + | 192 | WP_001296140.1 | YebW family protein | - |
| PYZ88_RS13085 | 2670514..2671170 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2671267..2671538 | + | 272 | - | - | Antitoxin |
| - | 2671305..2671408 | - | 104 | - | - | Toxin |
| PYZ88_RS13090 | 2671566..2671907 | - | 342 | WP_000976492.1 | YebY family protein | - |
| PYZ88_RS13095 | 2671920..2672792 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| PYZ88_RS13100 | 2672796..2673170 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| PYZ88_RS13105 | 2673309..2673539 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PYZ88_RS13110 | 2673641..2674297 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PYZ88_RS13115 | 2674321..2674983 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273784 NZ_CP119120:c2671408-2671305 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT273784 NZ_CP119120:2671267-2671538 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
