Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1897693..1897855 | Replicon | chromosome |
| Accession | NZ_CP119076 | ||
| Organism | Klebsiella aerogenes strain RX7.1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1897744..1897847 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1897693..1897855 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PYR66_RS08980 (PYR66_08975) | 1892821..1894881 | + | 2061 | WP_275049730.1 | oligopeptidase B | - |
| PYR66_RS08985 (PYR66_08980) | 1894884..1895543 | - | 660 | WP_275049731.1 | exodeoxyribonuclease X | - |
| PYR66_RS08990 (PYR66_08985) | 1895623..1895853 | - | 231 | WP_275049732.1 | DNA polymerase III subunit theta | - |
| PYR66_RS08995 (PYR66_08990) | 1895988..1896362 | + | 375 | WP_275049733.1 | CopC domain-containing protein YobA | - |
| PYR66_RS09000 (PYR66_08995) | 1896366..1897235 | + | 870 | WP_275049734.1 | copper homeostasis membrane protein CopD | - |
| PYR66_RS09005 (PYR66_09000) | 1897249..1897587 | + | 339 | WP_275049735.1 | YebY family protein | - |
| - | 1897693..1897855 | - | 163 | - | - | Antitoxin |
| - | 1897744..1897847 | + | 104 | - | - | Toxin |
| PYR66_RS09010 (PYR66_09005) | 1897975..1898862 | - | 888 | WP_275049736.1 | spore coat protein U domain-containing protein | - |
| PYR66_RS09015 (PYR66_09010) | 1898940..1901264 | - | 2325 | WP_275049737.1 | fimbria/pilus outer membrane usher protein | - |
| PYR66_RS09020 (PYR66_09015) | 1901267..1902019 | - | 753 | WP_275049738.1 | molecular chaperone | - |
| PYR66_RS09025 (PYR66_09020) | 1902037..1902555 | - | 519 | WP_275049739.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273733 NZ_CP119076:1897744-1897847 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 163 bp
>AT273733 NZ_CP119076:c1897855-1897693 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACCGTGACAGGTTTTCCAGTCCGCGACAAAAGT
GGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACCGTGACAGGTTTTCCAGTCCGCGACAAAAGT
GGT
