Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2071202..2071473 | Replicon | chromosome |
| Accession | NC_017635 | ||
| Organism | Escherichia coli W | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2071240..2071343 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2071202..2071473 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECW_RS10305 | 2068359..2069798 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECW_RS10310 | 2069916..2070152 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECW_RS10315 | 2070257..2070448 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECW_RS10320 | 2070449..2071105 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2071202..2071473 | + | 272 | - | - | Antitoxin |
| - | 2071240..2071343 | - | 104 | - | - | Toxin |
| ECW_RS10330 | 2071501..2071842 | - | 342 | WP_000976472.1 | YebY family protein | - |
| ECW_RS10335 | 2071855..2072727 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| ECW_RS10340 | 2072731..2073105 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| ECW_RS10345 | 2073244..2073474 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECW_RS10350 | 2073576..2074232 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECW_RS10355 | 2074256..2074918 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T27367 NC_017635:c2071343-2071240 [Escherichia coli W]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT27367 NC_017635:2071202-2071473 [Escherichia coli W]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
