Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1928917..1929057 | Replicon | chromosome |
| Accession | NZ_CP118932 | ||
| Organism | Serratia marcescens strain RX11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1928961..1929057 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1928917..1929057 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PXW05_RS09230 (PXW05_09230) | 1924186..1924581 | + | 396 | WP_004928846.1 | RidA family protein | - |
| PXW05_RS09235 (PXW05_09235) | 1924738..1925691 | + | 954 | WP_004928848.1 | prolyl aminopeptidase | - |
| PXW05_RS09240 (PXW05_09240) | 1925723..1925953 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| PXW05_RS09245 (PXW05_09245) | 1926298..1926816 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| PXW05_RS09250 (PXW05_09250) | 1927108..1927524 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| PXW05_RS09255 (PXW05_09255) | 1927527..1928408 | + | 882 | WP_275095740.1 | copper homeostasis membrane protein CopD | - |
| PXW05_RS09260 (PXW05_09260) | 1928478..1928819 | + | 342 | WP_033633333.1 | YebY family protein | - |
| - | 1928917..1929057 | - | 141 | - | - | Antitoxin |
| - | 1928961..1929057 | + | 97 | - | - | Toxin |
| PXW05_RS09265 (PXW05_09265) | 1929309..1929713 | + | 405 | WP_049188179.1 | hypothetical protein | - |
| PXW05_RS09270 (PXW05_09270) | 1929710..1929928 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| PXW05_RS09275 (PXW05_09275) | 1930003..1930353 | - | 351 | WP_049188181.1 | hypothetical protein | - |
| PXW05_RS09280 (PXW05_09280) | 1930601..1930951 | + | 351 | WP_004940949.1 | DUF4377 domain-containing protein | - |
| PXW05_RS09285 (PXW05_09285) | 1931135..1932334 | + | 1200 | WP_049240250.1 | trans-2-enoyl-CoA reductase family protein | - |
| PXW05_RS09290 (PXW05_09290) | 1932561..1932779 | + | 219 | WP_021504846.1 | hypothetical protein | - |
| PXW05_RS09295 (PXW05_09295) | 1932951..1933256 | + | 306 | WP_004940954.1 | hypothetical protein | - |
| PXW05_RS09300 (PXW05_09300) | 1933305..1933640 | + | 336 | WP_275095741.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T273594 NZ_CP118932:1928961-1929057 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT273594 NZ_CP118932:c1929057-1928917 [Serratia marcescens]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
