Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1909611..1909756 | Replicon | chromosome |
| Accession | NZ_CP118906 | ||
| Organism | Klebsiella pneumoniae strain T-hvKP | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1909647..1909749 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1909611..1909756 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PXG78_RS09145 | 1904741..1906801 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| PXG78_RS09150 | 1906805..1907464 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| PXG78_RS09155 | 1907543..1907773 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| PXG78_RS09160 | 1907886..1908260 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| PXG78_RS09165 | 1908264..1909133 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| PXG78_RS09170 | 1909150..1909488 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1909611..1909756 | - | 146 | - | - | Antitoxin |
| - | 1909647..1909749 | + | 103 | - | - | Toxin |
| PXG78_RS09175 | 1910124..1910267 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| PXG78_RS09180 | 1910372..1911340 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| PXG78_RS09185 | 1911497..1912150 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| PXG78_RS09190 | 1912147..1912338 | - | 192 | WP_002911395.1 | YebW family protein | - |
| PXG78_RS09195 | 1912436..1912675 | - | 240 | WP_002911393.1 | YebV family protein | - |
| PXG78_RS09200 | 1912791..1914224 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T273552 NZ_CP118906:1909647-1909749 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT273552 NZ_CP118906:c1909756-1909611 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
