Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1949117..1949262 | Replicon | chromosome |
| Accession | NZ_CP118901 | ||
| Organism | Klebsiella pneumoniae strain CRKP | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1949153..1949255 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1949117..1949262 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PXG74_RS09340 | 1944247..1946307 | + | 2061 | WP_047694778.1 | oligopeptidase B | - |
| PXG74_RS09345 | 1946311..1946970 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| PXG74_RS09350 | 1947049..1947279 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| PXG74_RS09355 | 1947392..1947766 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| PXG74_RS09360 | 1947770..1948639 | + | 870 | WP_073553501.1 | copper homeostasis membrane protein CopD | - |
| PXG74_RS09365 | 1948656..1948994 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1949117..1949262 | - | 146 | - | - | Antitoxin |
| - | 1949153..1949255 | + | 103 | - | - | Toxin |
| PXG74_RS09370 | 1949630..1949773 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| PXG74_RS09375 | 1949878..1950846 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| PXG74_RS09380 | 1951003..1951656 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| PXG74_RS09385 | 1951653..1951844 | - | 192 | WP_002911395.1 | YebW family protein | - |
| PXG74_RS09390 | 1951942..1952181 | - | 240 | WP_002911393.1 | YebV family protein | - |
| PXG74_RS09395 | 1952297..1953730 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T273534 NZ_CP118901:1949153-1949255 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT273534 NZ_CP118901:c1949262-1949117 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
