Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2827011..2827151 | Replicon | chromosome |
| Accession | NZ_CP118774 | ||
| Organism | Citrobacter braakii strain ASE1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2827013..2827116 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2827011..2827151 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PXN04_RS13555 (PXN04_13555) | 2824171..2825262 | + | 1092 | WP_275000148.1 | RecT family recombinase | - |
| PXN04_RS13560 (PXN04_13560) | 2825302..2825544 | + | 243 | WP_047415379.1 | DUF4060 family protein | - |
| PXN04_RS13565 (PXN04_13565) | 2825609..2825881 | + | 273 | WP_072034353.1 | excisionase | - |
| PXN04_RS13570 (PXN04_13570) | 2825850..2826935 | + | 1086 | WP_259686142.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2827011..2827151 | + | 141 | - | - | Antitoxin |
| - | 2827013..2827116 | - | 104 | - | - | Toxin |
| PXN04_RS13575 (PXN04_13575) | 2827272..2827610 | - | 339 | WP_003833793.1 | YebY family protein | - |
| PXN04_RS13580 (PXN04_13580) | 2827631..2828503 | - | 873 | WP_049271209.1 | copper homeostasis membrane protein CopD | - |
| PXN04_RS13585 (PXN04_13585) | 2828507..2828881 | - | 375 | WP_049271207.1 | CopC domain-containing protein YobA | - |
| PXN04_RS13590 (PXN04_13590) | 2829025..2829255 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| PXN04_RS13595 (PXN04_13595) | 2829362..2830018 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| PXN04_RS13600 (PXN04_13600) | 2830042..2830704 | + | 663 | WP_049040232.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2807545..2827610 | 20065 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273424 NZ_CP118774:c2827116-2827013 [Citrobacter braakii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT273424 NZ_CP118774:2827011-2827151 [Citrobacter braakii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
