Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-HTH_26
Location 441842..442444 Replicon chromosome
Accession NZ_CP118713
Organism Rhizobium sp. BJ04

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PO860_RS02145 Protein ID WP_273880146.1
Coordinates 442199..442444 (-) Length 82 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PO860_RS02140 Protein ID WP_183605786.1
Coordinates 441842..442189 (-) Length 116 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PO860_RS02115 (PO860_02115) 437803..438213 + 411 WP_275038062.1 transposase -
PO860_RS02120 (PO860_02120) 438210..438557 + 348 WP_183610376.1 IS66 family insertion sequence element accessory protein TnpB -
PO860_RS02125 (PO860_02125) 438603..440258 + 1656 WP_275038063.1 IS66 family transposase -
PO860_RS02130 (PO860_02130) 440267..440542 + 276 WP_183610375.1 hypothetical protein -
PO860_RS02135 (PO860_02135) 440696..441718 + 1023 WP_275038064.1 class I SAM-dependent methyltransferase -
PO860_RS02140 (PO860_02140) 441842..442189 - 348 WP_183605786.1 helix-turn-helix transcriptional regulator Antitoxin
PO860_RS02145 (PO860_02145) 442199..442444 - 246 WP_273880146.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PO860_RS02155 (PO860_02155) 442963..444525 + 1563 WP_183605787.1 exopolyphosphatase -
PO860_RS02160 (PO860_02160) 444534..445253 + 720 WP_272782982.1 RlmE family RNA methyltransferase -
PO860_RS02165 (PO860_02165) 445409..445792 + 384 WP_183606638.1 VOC family protein -
PO860_RS02170 (PO860_02170) 445854..447278 - 1425 WP_183605789.1 DHA2 family efflux MFS transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Cro/C1-type helix-turn-helix domain

(63-114)


Sequences

Toxin        


Download         Length: 82 a.a.        Molecular weight: 9032.63 Da        Isoelectric Point: 10.6821

>T273379 WP_273880146.1 NZ_CP118713:c442444-442199 [Rhizobium sp. BJ04]
MKKIAYSKAAAKALRKMQPKRAAAIVAKVEAFANSEPVDLKKLQGSEFFRIRVGQDRVIIDDQTMQVLVIKAGPRGDIYN
E

Download         Length: 246 bp

Antitoxin


Download         Length: 116 a.a.        Molecular weight: 12654.32 Da        Isoelectric Point: 4.3472

>AT273379 WP_183605786.1 NZ_CP118713:c442189-441842 [Rhizobium sp. BJ04]
MGEIQTLTIDGKGYVLLSEEDYRDLVDLSEARAAKARIDAGEETWPEDVVKALISGEDPVRVFRKHRGISVKELAEKAGL
SQPYLSEIETGKKEGSLDALKAIARILDVDLDDLV

Download         Length: 348 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References