Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 2720227..2720900 Replicon chromosome
Accession NZ_CP118687
Organism Rhizobium sp. MJ22

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PO862_RS13675 Protein ID WP_272782126.1
Coordinates 2720227..2720640 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag PO862_RS13680 Protein ID WP_272782124.1
Coordinates 2720637..2720900 (-) Length 88 a.a.

Genomic Context

PO862_RS13665PO862_RS13670PO862_RS13675PO862_RS13680PO862_RS13685PO862_RS13690PO862_RS13695
Location: 2717637..2718860 (1224 bp)
Type: Others
Protein ID: WP_183608225.1
Location: 2719116..2720048 (933 bp)
Type: Others
Protein ID: WP_273884229.1
Location: 2720227..2720640 (414 bp)
Type: Toxin
Protein ID: WP_272782126.1
Location: 2720637..2720900 (264 bp)
Type: Antitoxin
Protein ID: WP_272782124.1
Location: 2721025..2722575 (1551 bp)
Type: Others
Protein ID: WP_273884230.1
Location: 2722572..2723846 (1275 bp)
Type: Others
Protein ID: WP_183608222.1
Location: 2723859..2725802 (1944 bp)
Type: Others
Protein ID: WP_183608221.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PO862_RS13665 (PO862_13665)2717637..2718860-1224WP_183608225.1efflux RND transporter periplasmic adaptor subunit-
PO862_RS13670 (PO862_13670)2719116..2720048-933WP_273884229.1adenylate/guanylate cyclase domain-containing protein-
PO862_RS13675 (PO862_13675)2720227..2720640-414WP_272782126.1type II toxin-antitoxin system VapC family toxinToxin
PO862_RS13680 (PO862_13680)2720637..2720900-264WP_272782124.1type II toxin-antitoxin system VapB family antitoxinAntitoxin
PO862_RS13685 (PO862_13685)2721025..2722575-1551WP_273884230.1SpoVR family protein-
PO862_RS13690 (PO862_13690)2722572..2723846-1275WP_183608222.1YeaH/YhbH family protein-
PO862_RS13695 (PO862_13695)2723859..2725802-1944WP_183608221.1PrkA family serine protein kinase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-124)

Antitoxin

SpoVT-AbrB domain

(9-55)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15027.48 Da        Isoelectric Point: 6.7216

>T273373 WP_272782126.1 NZ_CP118687:c2720640-2720227 [Rhizobium sp. MJ22]
MTAWMLDTNIASHVIKGDRPEILKRLAALPMDEIVISSVTEGELLYGLAKRGYPKALSERVRQFLLRVDVLPWDHDVTRA
YGDLRAACEVKGVALAPLEMMIAAHAVATAATLVTRDKAFARVSEPLKLDGWANEGS

Download         Length: 414 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9952.93 Da        Isoelectric Point: 4.8553

>AT273373 WP_272782124.1 NZ_CP118687:c2720900-2720637 [Rhizobium sp. MJ22]
VASKTAKIFTTGRSQAVRLPADFRFEESEVFVRRDPKTGDVILSRKSDSWDGLFELHGRDQVPDDFMGPADRSQPSQDHD
PFEGWRE

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References