Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-HTH_26 |
| Location | 437382..437984 | Replicon | chromosome |
| Accession | NZ_CP118687 | ||
| Organism | Rhizobium sp. MJ22 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | PO862_RS02165 | Protein ID | WP_275034092.1 |
| Coordinates | 437739..437984 (-) | Length | 82 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | PO862_RS02160 | Protein ID | WP_275034090.1 |
| Coordinates | 437382..437729 (-) | Length | 116 a.a. |
Genomic Context
Location: 433995..435056 (1062 bp)
Type: Others
Protein ID: WP_273880136.1
Type: Others
Protein ID: WP_273880136.1
Location: 435057..436007 (951 bp)
Type: Others
Protein ID: WP_273880137.1
Type: Others
Protein ID: WP_273880137.1
Location: 436236..437258 (1023 bp)
Type: Others
Protein ID: WP_275034088.1
Type: Others
Protein ID: WP_275034088.1
Location: 438503..440065 (1563 bp)
Type: Others
Protein ID: WP_273883494.1
Type: Others
Protein ID: WP_273883494.1
Location: 440074..440793 (720 bp)
Type: Others
Protein ID: WP_272782982.1
Type: Others
Protein ID: WP_272782982.1
Location: 440949..441332 (384 bp)
Type: Others
Protein ID: WP_275035628.1
Type: Others
Protein ID: WP_275035628.1
Location: 432759..433814 (1056 bp)
Type: Others
Protein ID: WP_275034085.1
Type: Others
Protein ID: WP_275034085.1
Location: 437382..437729 (348 bp)
Type: Antitoxin
Protein ID: WP_275034090.1
Type: Antitoxin
Protein ID: WP_275034090.1
Location: 437739..437984 (246 bp)
Type: Toxin
Protein ID: WP_275034092.1
Type: Toxin
Protein ID: WP_275034092.1
Location: 441387..442811 (1425 bp)
Type: Others
Protein ID: WP_183605789.1
Type: Others
Protein ID: WP_183605789.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PO862_RS02140 (PO862_02140) | 432759..433814 | - | 1056 | WP_275034085.1 | dTDP-glucose 4,6-dehydratase | - |
| PO862_RS02145 (PO862_02145) | 433995..435056 | + | 1062 | WP_273880136.1 | GDP-mannose 4,6-dehydratase | - |
| PO862_RS02150 (PO862_02150) | 435057..436007 | + | 951 | WP_273880137.1 | GDP-L-fucose synthase | - |
| PO862_RS02155 (PO862_02155) | 436236..437258 | + | 1023 | WP_275034088.1 | class I SAM-dependent methyltransferase | - |
| PO862_RS02160 (PO862_02160) | 437382..437729 | - | 348 | WP_275034090.1 | helix-turn-helix transcriptional regulator | Antitoxin |
| PO862_RS02165 (PO862_02165) | 437739..437984 | - | 246 | WP_275034092.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| PO862_RS02175 (PO862_02175) | 438503..440065 | + | 1563 | WP_273883494.1 | exopolyphosphatase | - |
| PO862_RS02180 (PO862_02180) | 440074..440793 | + | 720 | WP_272782982.1 | RlmE family RNA methyltransferase | - |
| PO862_RS02185 (PO862_02185) | 440949..441332 | + | 384 | WP_275035628.1 | VOC family protein | - |
| PO862_RS02190 (PO862_02190) | 441387..442811 | - | 1425 | WP_183605789.1 | DHA2 family efflux MFS transporter permease subunit | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gmd | 432759..452440 | 19681 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.