Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 2365307..2365847 Replicon chromosome
Accession NZ_CP118675
Organism Komagataeibacter nataicola strain DS12

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag LV564_RS12125 Protein ID WP_275881213.1
Coordinates 2365548..2365847 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag LV564_RS12120 Protein ID WP_275881212.1
Coordinates 2365307..2365561 (+) Length 85 a.a.

Genomic Context

LV564_RS12090LV564_RS12095LV564_RS12100LV564_RS12105LV564_RS12110LV564_RS12120LV564_RS12125LV564_RS12115LV564_RS12130LV564_RS12135LV564_RS12140LV564_RS12145LV564_RS12150
Location: 2360681..2361253 (573 bp)
Type: Others
Protein ID: WP_141262432.1
Location: 2361650..2361919 (270 bp)
Type: Others
Protein ID: WP_141262431.1
Location: 2362263..2362628 (366 bp)
Type: Others
Protein ID: WP_275881211.1
Location: 2362625..2363002 (378 bp)
Type: Others
Protein ID: WP_141262429.1
Location: 2363070..2363627 (558 bp)
Type: Others
Protein ID: WP_141262428.1
Location: 2365307..2365561 (255 bp)
Type: Antitoxin
Protein ID: WP_275881212.1
Location: 2365548..2365847 (300 bp)
Type: Toxin
Protein ID: WP_275881213.1
Location: 2364093..2364575 (483 bp)
Type: Others
Protein ID: WP_141262426.1
Location: 2365876..2366142 (267 bp)
Type: Others
Protein ID: WP_275881214.1
Location: 2366139..2367347 (1209 bp)
Type: Others
Protein ID: WP_275881215.1
Location: 2367344..2368345 (1002 bp)
Type: Others
Protein ID: WP_275881216.1
Location: 2368342..2369025 (684 bp)
Type: Others
Protein ID: WP_275881217.1
Location: 2369031..2370416 (1386 bp)
Type: Others
Protein ID: WP_275881218.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
LV564_RS12090 (LV564_12100)2360681..2361253+573WP_141262432.1hypothetical protein-
LV564_RS12095 (LV564_12105)2361650..2361919+270WP_141262431.1hypothetical protein-
LV564_RS12100 (LV564_12110)2362263..2362628+366WP_275881211.1hypothetical protein-
LV564_RS12105 (LV564_12115)2362625..2363002+378WP_141262429.1hypothetical protein-
LV564_RS12110 (LV564_12120)2363070..2363627+558WP_141262428.1phosphate-starvation-inducible PsiE family protein-
LV564_RS12115 (LV564_12125)2364093..2364575-483WP_141262426.1Hsp20 family protein-
LV564_RS12120 (LV564_12130)2365307..2365561+255WP_275881212.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
LV564_RS12125 (LV564_12135)2365548..2365847+300WP_275881213.1type II toxin-antitoxin system RelE/ParE family toxinToxin
LV564_RS12130 (LV564_12140)2365876..2366142-267WP_275881214.1DUF2274 domain-containing protein-
LV564_RS12135 (LV564_12145)2366139..2367347-1209WP_275881215.1TrbI/VirB10 family protein-
LV564_RS12140 (LV564_12150)2367344..2368345-1002WP_275881216.1P-type conjugative transfer protein TrbG-
LV564_RS12145 (LV564_12155)2368342..2369025-684WP_275881217.1conjugal transfer protein TrbF-
LV564_RS12150 (LV564_12160)2369031..2370416-1386WP_275881218.1P-type conjugative transfer protein TrbL-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-92)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11503.24 Da        Isoelectric Point: 7.0612

>T273368 WP_275881213.1 NZ_CP118675:2365548-2365847 [Komagataeibacter nataicola]
MPTCRKTRLSEDDIIGIYMQGVREFGPRQAEAYHAGLADTFDLIALHPQLAPERREFAPPIRLHRHQAHHILYLIDDDGV
LIVRVLPRLQRWERLVGTD

Download         Length: 300 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9315.38 Da        Isoelectric Point: 6.4619

>AT273368 WP_275881212.1 NZ_CP118675:2365307-2365561 [Komagataeibacter nataicola]
MATMNVSLPDPMKEWVEAQARTGRYSNASDYVRDLIRRDQEARAVHDEIQTHITAGLRSGVGTRSMRQLLQDARAAAGTT
DADL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References