Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 2365307..2365847 Replicon chromosome
Accession NZ_CP118675
Organism Komagataeibacter nataicola strain DS12

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag LV564_RS12125 Protein ID WP_275881213.1
Coordinates 2365548..2365847 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag LV564_RS12120 Protein ID WP_275881212.1
Coordinates 2365307..2365561 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LV564_RS12090 (LV564_12100) 2360681..2361253 + 573 WP_141262432.1 hypothetical protein -
LV564_RS12095 (LV564_12105) 2361650..2361919 + 270 WP_141262431.1 hypothetical protein -
LV564_RS12100 (LV564_12110) 2362263..2362628 + 366 WP_275881211.1 hypothetical protein -
LV564_RS12105 (LV564_12115) 2362625..2363002 + 378 WP_141262429.1 hypothetical protein -
LV564_RS12110 (LV564_12120) 2363070..2363627 + 558 WP_141262428.1 phosphate-starvation-inducible PsiE family protein -
LV564_RS12115 (LV564_12125) 2364093..2364575 - 483 WP_141262426.1 Hsp20 family protein -
LV564_RS12120 (LV564_12130) 2365307..2365561 + 255 WP_275881212.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
LV564_RS12125 (LV564_12135) 2365548..2365847 + 300 WP_275881213.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
LV564_RS12130 (LV564_12140) 2365876..2366142 - 267 WP_275881214.1 DUF2274 domain-containing protein -
LV564_RS12135 (LV564_12145) 2366139..2367347 - 1209 WP_275881215.1 TrbI/VirB10 family protein -
LV564_RS12140 (LV564_12150) 2367344..2368345 - 1002 WP_275881216.1 P-type conjugative transfer protein TrbG -
LV564_RS12145 (LV564_12155) 2368342..2369025 - 684 WP_275881217.1 conjugal transfer protein TrbF -
LV564_RS12150 (LV564_12160) 2369031..2370416 - 1386 WP_275881218.1 P-type conjugative transfer protein TrbL -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(7-92)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11503.24 Da        Isoelectric Point: 7.0612

>T273368 WP_275881213.1 NZ_CP118675:2365548-2365847 [Komagataeibacter nataicola]
MPTCRKTRLSEDDIIGIYMQGVREFGPRQAEAYHAGLADTFDLIALHPQLAPERREFAPPIRLHRHQAHHILYLIDDDGV
LIVRVLPRLQRWERLVGTD

Download         Length: 300 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9315.38 Da        Isoelectric Point: 6.4619

>AT273368 WP_275881212.1 NZ_CP118675:2365307-2365561 [Komagataeibacter nataicola]
MATMNVSLPDPMKEWVEAQARTGRYSNASDYVRDLIRRDQEARAVHDEIQTHITAGLRSGVGTRSMRQLLQDARAAAGTT
DADL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References