Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 322216..322742 Replicon plasmid pVWJL.P1
Accession NZ_CP118630
Organism Pantoea dispersa strain VWJL.P1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PWF83_RS20970 Protein ID WP_275030028.1
Coordinates 322216..322503 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A8E1S2J3
Locus tag PWF83_RS20975 Protein ID WP_058759167.1
Coordinates 322503..322742 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PWF83_RS20955 (PWF83_20965) 318118..318900 - 783 WP_136548392.1 acetolactate decarboxylase -
PWF83_RS20960 (PWF83_20970) 319005..319886 + 882 WP_275030025.1 LysR family transcriptional regulator -
PWF83_RS20965 (PWF83_20975) 320316..322097 + 1782 WP_275030026.1 sensor domain-containing phosphodiesterase -
PWF83_RS20970 (PWF83_20980) 322216..322503 - 288 WP_275030028.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PWF83_RS20975 (PWF83_20985) 322503..322742 - 240 WP_058759167.1 type II toxin-antitoxin system antitoxin RelB Antitoxin
PWF83_RS20980 (PWF83_20990) 322870..325572 - 2703 WP_150059019.1 HTH-type transcriptional regulator MalT -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - iroN 1..708540 708540


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-84)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-78)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11191.25 Da        Isoelectric Point: 10.1967

>T273326 WP_275030028.1 NZ_CP118630:c322503-322216 [Pantoea dispersa]
MAYFLDFDERALKEWRKLGSTVREQLKKKLAEVLEAPRIEAIKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERAEVYNEAVKRIL

Download         Length: 288 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9071.48 Da        Isoelectric Point: 4.5230

>AT273326 WP_058759167.1 NZ_CP118630:c322742-322503 [Pantoea dispersa]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIAENERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDDL

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References