Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) shpAB/BrnT-BrnA
Location 3899205..3899787 Replicon chromosome
Accession NZ_CP118629
Organism Pantoea dispersa strain VWJL.P1

Toxin (Protein)


Gene name shpA Uniprot ID -
Locus tag PWF83_RS18150 Protein ID WP_058771045.1
Coordinates 3899488..3899787 (-) Length 100 a.a.

Antitoxin (Protein)


Gene name shpB Uniprot ID A0A8E1S1N8
Locus tag PWF83_RS18145 Protein ID WP_058775497.1
Coordinates 3899205..3899507 (-) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PWF83_RS18140 (PWF83_18150) 3895819..3899199 + 3381 WP_275026959.1 cellulose synthase complex outer membrane protein BcsC -
PWF83_RS18145 (PWF83_18155) 3899205..3899507 - 303 WP_058775497.1 BrnA antitoxin family protein Antitoxin
PWF83_RS18150 (PWF83_18160) 3899488..3899787 - 300 WP_058771045.1 BrnT family toxin Toxin
PWF83_RS18155 (PWF83_18165) 3900010..3901014 - 1005 WP_031279620.1 glycosyl hydrolase family 8 -
PWF83_RS18160 (PWF83_18170) 3901024..3901470 - 447 WP_275026965.1 cellulose biosynthesis protein BcsD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(9-90)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(10-93)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11919.36 Da        Isoelectric Point: 6.9910

>T273324 WP_058771045.1 NZ_CP118629:c3899787-3899488 [Pantoea dispersa]
MQTEPEFEWDTTKAETNFRKHGIRFEVAARVFEDPFHLSVQDRYENGEYRWQTIGNVMGHVVILVAHTVRFETDVERIRI
ISARHATRIERRRYEQSQV

Download         Length: 300 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11490.15 Da        Isoelectric Point: 9.6528

>AT273324 WP_058775497.1 NZ_CP118629:c3899507-3899205 [Pantoea dispersa]
MSKVRFKRSELPPLTDKQQAELDALSRKQDSDIQCDDIAPLDDSFWQAAERGRFYRPVKTQASIRIDADILEWLKAPGKG
YQTRLNAILRAAMLRELQGK

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References