Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type IV Classification (family/domain) yeeUV (cbtA-cbeA)/CbtA-CbeA
Location 1095904..1096588 Replicon chromosome
Accession NZ_CP118629
Organism Pantoea dispersa strain VWJL.P1

Toxin (Protein)


Gene name yeeV Uniprot ID -
Locus tag PWF83_RS04915 Protein ID WP_130942918.1
Coordinates 1095904..1096233 (-) Length 110 a.a.

Antitoxin (Protein)


Gene name yeeU Uniprot ID -
Locus tag PWF83_RS04920 Protein ID WP_015386412.1
Coordinates 1096265..1096588 (-) Length 108 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PWF83_RS04895 (PWF83_04900) 1091880..1092112 + 233 Protein_940 DinI-like family protein -
PWF83_RS04900 (PWF83_04905) 1092437..1093600 + 1164 WP_275028215.1 AAA family ATPase -
PWF83_RS04905 (PWF83_04910) 1093604..1094641 + 1038 WP_275028216.1 DUF4435 domain-containing protein -
PWF83_RS04910 (PWF83_04915) 1094679..1095606 - 928 Protein_943 phage portal protein -
PWF83_RS04915 (PWF83_04920) 1095904..1096233 - 330 WP_130942918.1 TA system toxin CbtA family protein Toxin
PWF83_RS04920 (PWF83_04925) 1096265..1096588 - 324 WP_015386412.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
PWF83_RS04925 (PWF83_04930) 1096610..1096831 - 222 WP_219940149.1 DUF987 family protein -
PWF83_RS04930 (PWF83_04935) 1096840..1097313 - 474 WP_130942920.1 DNA repair protein RadC -
PWF83_RS04935 (PWF83_04940) 1097346..1098164 - 819 WP_275028217.1 DUF932 domain-containing protein -
PWF83_RS04940 (PWF83_04945) 1098783..1101302 + 2520 WP_275028218.1 antiviral RADAR system adenosine triphosphatase RdrA -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 1089159..1117922 28763


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(12-108)

Antitoxin

(4-102)


Sequences


Toxin        


Download         Length: 110 a.a.        Molecular weight: 12465.12 Da        Isoelectric Point: 4.8087

>T273317 WP_130942918.1 NZ_CP118629:c1096233-1095904 [Pantoea dispersa]
MHISSVPATVPVSSRLSPVQVWQQLLTYLLEQHYGLTLNDTPFHDDTAIEEHIDAGITLADAVNFLVEKYELVRIDRKGF
SWQEQTPYISVVDILRARRSTDLLKTNVE

Download         Length: 330 bp


Antitoxin


Download         Length: 108 a.a.        Molecular weight: 11953.66 Da        Isoelectric Point: 7.0268

>AT273317 WP_015386412.1 NZ_CP118629:c1096588-1096265 [Pantoea dispersa]
MQNSWGLKRDISPCFGARLVQEGCRLHFLADRAGISGTFNKDEALRLDQAFPLVMKQLELMLTTGELNPRHQHCVTLHHN
GLTCEADTLGSHGYVYIVIYPQASATQ

Download         Length: 324 bp


Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure

References