Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2138532..2138803 | Replicon | chromosome |
| Accession | NZ_CP118601 | ||
| Organism | Escherichia coli strain NB4833 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2138662..2138765 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2138532..2138803 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OU688_RS10260 | 2135087..2135749 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OU688_RS10265 | 2135773..2136429 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OU688_RS10270 | 2136531..2136761 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OU688_RS10275 | 2136900..2137274 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| OU688_RS10280 | 2137278..2138150 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| OU688_RS10285 | 2138163..2138504 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2138532..2138803 | - | 272 | - | - | Antitoxin |
| - | 2138662..2138765 | + | 104 | - | - | Toxin |
| OU688_RS10290 | 2138900..2139556 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| OU688_RS10295 | 2139557..2139748 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OU688_RS10300 | 2139853..2140089 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OU688_RS10305 | 2140207..2141646 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273276 NZ_CP118601:2138662-2138765 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT273276 NZ_CP118601:c2138803-2138532 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
