Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 2553834..2554362 | Replicon | chromosome |
| Accession | NZ_CP118586 | ||
| Organism | Vibrio harveyi strain fish6 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | PWW23_RS12030 | Protein ID | WP_045382929.1 |
| Coordinates | 2554072..2554362 (+) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A347UR02 |
| Locus tag | PWW23_RS12025 | Protein ID | WP_005377003.1 |
| Coordinates | 2553834..2554082 (+) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PWW23_RS11955 | 2549279..2549848 | - | 570 | WP_274882190.1 | hypothetical protein | - |
| PWW23_RS11960 | 2549950..2550012 | - | 63 | Protein_2281 | DUF3265 domain-containing protein | - |
| PWW23_RS11965 | 2550003..2550434 | - | 432 | WP_155487907.1 | hypothetical protein | - |
| PWW23_RS11970 | 2550464..2550556 | - | 93 | WP_274882191.1 | DUF3265 domain-containing protein | - |
| PWW23_RS11975 | 2550589..2551110 | - | 522 | WP_274882192.1 | hypothetical protein | - |
| PWW23_RS11980 | 2551218..2551310 | - | 93 | WP_080279241.1 | DUF3265 domain-containing protein | - |
| PWW23_RS11985 | 2551337..2551846 | - | 510 | WP_239947574.1 | hypothetical protein | - |
| PWW23_RS11990 | 2551892..2551984 | - | 93 | WP_077681052.1 | DUF3265 domain-containing protein | - |
| PWW23_RS11995 | 2552018..2552374 | - | 357 | WP_020198239.1 | hypothetical protein | - |
| PWW23_RS12000 | 2552443..2552535 | - | 93 | WP_080252672.1 | DUF3265 domain-containing protein | - |
| PWW23_RS12005 | 2552556..2553173 | - | 618 | WP_063344807.1 | LysE family translocator | - |
| PWW23_RS12010 | 2553257..2553319 | - | 63 | Protein_2291 | DUF3265 domain-containing protein | - |
| PWW23_RS12015 | 2553316..2553639 | - | 324 | WP_005536953.1 | hypothetical protein | - |
| PWW23_RS12020 | 2553667..2553777 | - | 111 | WP_231570825.1 | DUF3265 domain-containing protein | - |
| PWW23_RS12025 | 2553834..2554082 | + | 249 | WP_005377003.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| PWW23_RS12030 | 2554072..2554362 | + | 291 | WP_045382929.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| PWW23_RS12035 | 2554381..2554470 | - | 90 | WP_071881309.1 | DUF3265 domain-containing protein | - |
| PWW23_RS12040 | 2554488..2554766 | - | 279 | WP_038886177.1 | hypothetical protein | - |
| PWW23_RS12045 | 2554935..2555657 | - | 723 | WP_274882193.1 | hypothetical protein | - |
| PWW23_RS12050 | 2555801..2556586 | - | 786 | WP_274882194.1 | hypothetical protein | - |
| PWW23_RS12055 | 2557330..2557977 | - | 648 | WP_274882195.1 | glutathione S-transferase | - |
| PWW23_RS12060 | 2558023..2558115 | - | 93 | WP_200885265.1 | DUF3265 domain-containing protein | - |
| PWW23_RS12065 | 2558130..2558762 | - | 633 | WP_045604826.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2500063..2573825 | 73762 | |
| - | inside | Integron | - | - | 2507222..2573825 | 66603 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|