Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2655473..2655674 | Replicon | chromosome |
| Accession | NZ_CP118567 | ||
| Organism | Enterobacter hormaechei strain 2020CK-00199 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2655478..2655581 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2655473..2655674 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PXV21_RS12570 (PXV21_12570) | 2651741..2653183 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PXV21_RS12575 (PXV21_12575) | 2653288..2653527 | + | 240 | WP_006811010.1 | YebV family protein | - |
| PXV21_RS12580 (PXV21_12580) | 2653562..2654206 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| PXV21_RS12585 (PXV21_12585) | 2654374..2655354 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| PXV21_RS12590 (PXV21_12590) | 2655400..2655597 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2655473..2655674 | + | 202 | - | - | Antitoxin |
| - | 2655478..2655581 | - | 104 | - | - | Toxin |
| PXV21_RS12595 (PXV21_12595) | 2655723..2656061 | - | 339 | WP_022648464.1 | YebY family protein | - |
| PXV21_RS12600 (PXV21_12600) | 2656078..2656947 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| PXV21_RS12605 (PXV21_12605) | 2656949..2657320 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| PXV21_RS12610 (PXV21_12610) | 2657458..2657688 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| PXV21_RS12615 (PXV21_12615) | 2657800..2658438 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| PXV21_RS12620 (PXV21_12620) | 2658463..2659125 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273234 NZ_CP118567:c2655581-2655478 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT273234 NZ_CP118567:2655473-2655674 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
