Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2632795..2632940 | Replicon | chromosome |
| Accession | NZ_CP118542 | ||
| Organism | Salmonella sp. CVCC 1806 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2632797..2632900 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2632795..2632940 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| - | 2632797..2632900 | - | 104 | - | - | Toxin |
| PWA52_RS12835 | 2629675..2630505 | + | 831 | WP_001126031.1 | recombination protein RecT | - |
| PWA52_RS12840 | 2630552..2630737 | + | 186 | WP_000280163.1 | DUF1187 family protein | - |
| PWA52_RS12845 | 2630836..2631264 | + | 429 | WP_000743301.1 | hypothetical protein | - |
| PWA52_RS12850 | 2631325..2631603 | + | 279 | WP_001575998.1 | excisionase | - |
| PWA52_RS12855 | 2631578..2632657 | + | 1080 | WP_000087636.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| PWA52_RS12860 | 2633040..2633393 | - | 354 | WP_000722370.1 | YebY family protein | - |
| PWA52_RS12865 | 2633410..2634285 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| PWA52_RS12870 | 2634286..2634660 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PWA52_RS12875 | 2634798..2635028 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PWA52_RS12880 | 2635136..2635792 | + | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| PWA52_RS12885 | 2635816..2636514 | + | 699 | WP_000944288.1 | exodeoxyribonuclease X | - |
| - | 2632797..2632900 | - | 104 | - | - | Toxin |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 / sodCI | 2573070..2638599 | 65529 | |
| - | inside | Prophage | - | sopE2 / sodCI | 2560145..2654807 | 94662 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273198 NZ_CP118542:c2632900-2632797 [Salmonella sp. CVCC 1806]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT273198 NZ_CP118542:2632795-2632940 [Salmonella sp. CVCC 1806]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG
