Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1954582..1954727 | Replicon | chromosome |
| Accession | NZ_CP118398 | ||
| Organism | Klebsiella pneumoniae strain 2020CK-00223 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1954618..1954720 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1954582..1954727 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PWK27_RS09740 (PWK27_09740) | 1949712..1951772 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| PWK27_RS09745 (PWK27_09745) | 1951776..1952435 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| PWK27_RS09750 (PWK27_09750) | 1952514..1952744 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| PWK27_RS09755 (PWK27_09755) | 1952857..1953231 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| PWK27_RS09760 (PWK27_09760) | 1953235..1954104 | + | 870 | WP_104158933.1 | copper homeostasis membrane protein CopD | - |
| PWK27_RS09765 (PWK27_09765) | 1954121..1954459 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1954582..1954727 | - | 146 | - | - | Antitoxin |
| - | 1954618..1954720 | + | 103 | - | - | Toxin |
| PWK27_RS09770 (PWK27_09770) | 1955097..1955237 | - | 141 | Protein_1909 | Ecr family regulatory small membrane protein | - |
| PWK27_RS09775 (PWK27_09775) | 1955342..1956310 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| PWK27_RS09780 (PWK27_09780) | 1956467..1957120 | + | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| PWK27_RS09785 (PWK27_09785) | 1957117..1957308 | - | 192 | WP_002911395.1 | YebW family protein | - |
| PWK27_RS09790 (PWK27_09790) | 1957406..1957645 | - | 240 | WP_002911393.1 | YebV family protein | - |
| PWK27_RS09795 (PWK27_09795) | 1957761..1959194 | - | 1434 | WP_232553776.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T273095 NZ_CP118398:1954618-1954720 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCGTTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT273095 NZ_CP118398:c1954727-1954582 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAACGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAACGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
