Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2210630..2210831 | Replicon | chromosome |
| Accession | NZ_CP118383 | ||
| Organism | Enterobacter hormaechei strain 2020CK-00224 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2210635..2210738 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2210630..2210831 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PWH45_RS10565 (PWH45_10565) | 2206890..2208338 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PWH45_RS10570 (PWH45_10570) | 2208445..2208684 | + | 240 | WP_003859885.1 | YebV family protein | - |
| PWH45_RS10575 (PWH45_10575) | 2208719..2209363 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| PWH45_RS10580 (PWH45_10580) | 2209531..2210511 | + | 981 | WP_047747105.1 | VirK/YbjX family protein | - |
| PWH45_RS10585 (PWH45_10585) | 2210557..2210754 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2210630..2210831 | + | 202 | - | - | Antitoxin |
| - | 2210635..2210738 | - | 104 | - | - | Toxin |
| PWH45_RS10590 (PWH45_10590) | 2210880..2211218 | - | 339 | WP_003859787.1 | YebY family protein | - |
| PWH45_RS10595 (PWH45_10595) | 2211235..2212104 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| PWH45_RS10600 (PWH45_10600) | 2212106..2212477 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| PWH45_RS10605 (PWH45_10605) | 2212615..2212845 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| PWH45_RS10610 (PWH45_10610) | 2212957..2213607 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| PWH45_RS10615 (PWH45_10615) | 2213632..2214294 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273072 NZ_CP118383:c2210738-2210635 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT273072 NZ_CP118383:2210630-2210831 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
