Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1853119..1853265 | Replicon | chromosome |
| Accession | NZ_CP118332 | ||
| Organism | Klebsiella aerogenes strain IIIF7SW-P1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1853154..1853257 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1853119..1853265 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZS33_RS08845 | 1848228..1850288 | + | 2061 | WP_047075799.1 | oligopeptidase B | - |
| HZS33_RS08850 | 1850291..1850950 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| HZS33_RS08855 | 1851030..1851260 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| HZS33_RS08860 | 1851395..1851769 | + | 375 | WP_026612268.1 | CopC domain-containing protein YobA | - |
| HZS33_RS08865 | 1851773..1852642 | + | 870 | WP_047055873.1 | copper homeostasis membrane protein CopD | - |
| HZS33_RS08870 | 1852656..1852997 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 1853119..1853265 | - | 147 | - | - | Antitoxin |
| - | 1853154..1853257 | + | 104 | - | - | Toxin |
| HZS33_RS08875 | 1853385..1854332 | - | 948 | WP_032709999.1 | spore coat U domain-containing protein | - |
| HZS33_RS08880 | 1854351..1856675 | - | 2325 | WP_045360584.1 | fimbria/pilus outer membrane usher protein | - |
| HZS33_RS08885 | 1856678..1857427 | - | 750 | WP_045365658.1 | molecular chaperone | - |
| HZS33_RS08890 | 1857445..1857963 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273063 NZ_CP118332:1853154-1853257 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT273063 NZ_CP118332:c1853265-1853119 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
