Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2666194..2666395 | Replicon | chromosome |
| Accession | NZ_CP118279 | ||
| Organism | Enterobacter hormaechei strain LG3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2666199..2666302 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2666194..2666395 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNGFDJGK_RS12770 (LNGFDJGK_02524) | 2662454..2663902 | + | 1449 | WP_200893253.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LNGFDJGK_RS12775 (LNGFDJGK_02525) | 2664009..2664248 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LNGFDJGK_RS12780 (LNGFDJGK_02526) | 2664283..2664927 | - | 645 | WP_045337547.1 | protein-serine/threonine phosphatase | - |
| LNGFDJGK_RS12785 (LNGFDJGK_02527) | 2665095..2666075 | + | 981 | WP_045337549.1 | VirK/YbjX family protein | - |
| LNGFDJGK_RS12790 | 2666121..2666318 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2666194..2666395 | + | 202 | - | - | Antitoxin |
| - | 2666199..2666302 | - | 104 | - | - | Toxin |
| LNGFDJGK_RS12795 (LNGFDJGK_02528) | 2666444..2666782 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LNGFDJGK_RS12800 (LNGFDJGK_02529) | 2666799..2667668 | - | 870 | WP_045337550.1 | copper homeostasis membrane protein CopD | - |
| LNGFDJGK_RS12805 (LNGFDJGK_02530) | 2667670..2668041 | - | 372 | WP_045329847.1 | CopC domain-containing protein YobA | - |
| LNGFDJGK_RS12810 (LNGFDJGK_02531) | 2668179..2668409 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LNGFDJGK_RS12815 (LNGFDJGK_02532) | 2668521..2669171 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| LNGFDJGK_RS12820 (LNGFDJGK_02533) | 2669196..2669858 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T273052 NZ_CP118279:c2666302-2666199 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT273052 NZ_CP118279:2666194-2666395 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
