Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1871172..1871319 | Replicon | chromosome |
| Accession | NZ_CP118278 | ||
| Organism | Klebsiella quasipneumoniae strain IIIF3SW-P1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1871213..1871315 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1871172..1871319 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HW458_RS08955 | 1866307..1868367 | + | 2061 | WP_004203388.1 | oligopeptidase B | - |
| HW458_RS08960 | 1868371..1869030 | - | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| HW458_RS08965 | 1869109..1869339 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HW458_RS08970 | 1869452..1869826 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| HW458_RS08975 | 1869830..1870699 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| HW458_RS08980 | 1870716..1871054 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1871172..1871319 | - | 148 | - | - | Antitoxin |
| - | 1871213..1871315 | + | 103 | - | - | Toxin |
| HW458_RS08985 | 1871703..1871846 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| HW458_RS08990 | 1871950..1872918 | - | 969 | WP_131079753.1 | VirK/YbjX family protein | - |
| HW458_RS08995 | 1873075..1873728 | + | 654 | WP_004203382.1 | protein-serine/threonine phosphatase | - |
| HW458_RS09000 | 1873725..1873916 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HW458_RS09005 | 1874014..1874253 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HW458_RS09010 | 1874370..1875803 | - | 1434 | WP_017900211.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T273041 NZ_CP118278:1871213-1871315 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT273041 NZ_CP118278:c1871319-1871172 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
