Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1879606..1879753 | Replicon | chromosome |
| Accession | NZ_CP118275 | ||
| Organism | Klebsiella quasipneumoniae strain IF1SW-P4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1879647..1879749 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1879606..1879753 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HU252_RS09050 | 1874741..1876801 | + | 2061 | WP_065904503.1 | oligopeptidase B | - |
| HU252_RS09055 | 1876805..1877464 | - | 660 | WP_065904507.1 | exodeoxyribonuclease X | - |
| HU252_RS09060 | 1877543..1877773 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HU252_RS09065 | 1877886..1878260 | + | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| HU252_RS09070 | 1878264..1879133 | + | 870 | WP_004203385.1 | copper homeostasis membrane protein CopD | - |
| HU252_RS09075 | 1879150..1879488 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1879606..1879753 | - | 148 | - | - | Antitoxin |
| - | 1879647..1879749 | + | 103 | - | - | Toxin |
| HU252_RS09080 | 1880137..1880280 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| HU252_RS09085 | 1880384..1881352 | - | 969 | WP_065904512.1 | VirK/YbjX family protein | - |
| HU252_RS09090 | 1881509..1882162 | + | 654 | WP_004203382.1 | protein-serine/threonine phosphatase | - |
| HU252_RS09095 | 1882159..1882350 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HU252_RS09100 | 1882448..1882687 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HU252_RS09105 | 1882804..1884237 | - | 1434 | WP_017900211.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T273014 NZ_CP118275:1879647-1879749 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT273014 NZ_CP118275:c1879753-1879606 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
