Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2053593..2053761 | Replicon | chromosome |
| Accession | NZ_CP118223 | ||
| Organism | Klebsiella grimontii strain YWC001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2053651..2053754 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2053593..2053761 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PVK07_RS09740 (PVK07_09740) | 2048720..2050780 | + | 2061 | WP_116943571.1 | oligopeptidase B | - |
| PVK07_RS09745 (PVK07_09745) | 2050787..2051446 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| PVK07_RS09750 (PVK07_09750) | 2051525..2051755 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| PVK07_RS09755 (PVK07_09755) | 2051891..2052265 | + | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| PVK07_RS09760 (PVK07_09760) | 2052270..2053139 | + | 870 | WP_201160267.1 | copper homeostasis membrane protein CopD | - |
| PVK07_RS09765 (PVK07_09765) | 2053156..2053494 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2053593..2053761 | - | 169 | - | - | Antitoxin |
| - | 2053651..2053754 | + | 104 | - | - | Toxin |
| PVK07_RS09770 (PVK07_09770) | 2053879..2054838 | - | 960 | WP_049085573.1 | spore coat protein U domain-containing protein | - |
| PVK07_RS09775 (PVK07_09775) | 2054853..2057183 | - | 2331 | WP_049089570.1 | fimbria/pilus outer membrane usher protein | - |
| PVK07_RS09780 (PVK07_09780) | 2057186..2057950 | - | 765 | WP_004134823.1 | fimbria/pilus periplasmic chaperone | - |
| PVK07_RS09785 (PVK07_09785) | 2057969..2058487 | - | 519 | WP_049099811.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272948 NZ_CP118223:2053651-2053754 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT272948 NZ_CP118223:c2053761-2053593 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
