Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbE-relB/ParE-YafN
Location 3752453..3752969 Replicon chromosome
Accession NZ_CP118154
Organism Pseudomonas chlororaphis strain ATCC 17414

Toxin (Protein)


Gene name stbE Uniprot ID A0A285EY61
Locus tag PUP71_RS17100 Protein ID WP_009041601.1
Coordinates 3752453..3752734 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PUP71_RS17105 Protein ID WP_081002203.1
Coordinates 3752724..3752969 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PUP71_RS17080 (PUP71_17080) 3748713..3749609 - 897 WP_053259195.1 HlyD family secretion protein -
PUP71_RS17085 (PUP71_17085) 3749606..3749815 - 210 WP_007932080.1 DUF1656 domain-containing protein -
PUP71_RS17090 (PUP71_17090) 3749812..3751896 - 2085 WP_053259194.1 FUSC family protein -
PUP71_RS17095 (PUP71_17095) 3751893..3752321 - 429 WP_053259193.1 MarR family transcriptional regulator -
PUP71_RS17100 (PUP71_17100) 3752453..3752734 - 282 WP_009041601.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PUP71_RS17105 (PUP71_17105) 3752724..3752969 - 246 WP_081002203.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
PUP71_RS17110 (PUP71_17110) 3753032..3753277 - 246 WP_009041599.1 DUF2789 domain-containing protein -
PUP71_RS17115 (PUP71_17115) 3753415..3753876 - 462 WP_053259191.1 YbaK/EbsC family protein -
PUP71_RS17120 (PUP71_17120) 3754100..3755485 + 1386 WP_053259190.1 nodulation protein NfeD -
PUP71_RS17125 (PUP71_17125) 3755487..3756245 + 759 WP_007932057.1 slipin family protein -
PUP71_RS17130 (PUP71_17130) 3756211..3757215 - 1005 WP_053259189.1 aspartyl beta-hydroxylase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-70)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10879.81 Da        Isoelectric Point: 10.5797

>T272894 WP_009041601.1 NZ_CP118154:c3752734-3752453 [Pseudomonas chlororaphis]
MTYKLQFLPSARKEWDKLGHTLREQFKKKLAERLEMPRVPADALHGMADCYKIKLKASGYRLVYQVIEDQVVVSVVAVGK
RERSAVYERARKR

Download         Length: 282 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8843.18 Da        Isoelectric Point: 4.7164

>AT272894 WP_081002203.1 NZ_CP118154:c3752969-3752724 [Pseudomonas chlororaphis]
MQSVLADKAVSVSELKKNPSAVLSSAQGGPVAVLNHNRVMGYMVPADVFEAMMERLDDLELAEIVRARRHETPVPVNLDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A285EY61

Antitoxin

Source ID Structure

References