272851

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RHH(antitoxin)
Location 1232394..1232932 Replicon chromosome
Accession NZ_CP118147
Organism Pseudomonas chlororaphis strain ATCC 174151

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PUP56_RS05465 Protein ID WP_114760040.1
Coordinates 1232654..1232932 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag PUP56_RS05460 Protein ID WP_009042148.1
Coordinates 1232394..1232657 (+) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PUP56_RS05445 (PUP56_05445) 1228384..1230657 - 2274 WP_114760042.1 TonB-dependent siderophore receptor -
PUP56_RS05450 (PUP56_05450) 1230863..1231543 + 681 WP_009042146.1 Fe2+-dependent dioxygenase -
PUP56_RS05455 (PUP56_05455) 1231547..1232332 + 786 WP_114760041.1 tetratricopeptide repeat protein -
PUP56_RS05460 (PUP56_05460) 1232394..1232657 + 264 WP_009042148.1 ribbon-helix-helix domain-containing protein Antitoxin
PUP56_RS05465 (PUP56_05465) 1232654..1232932 + 279 WP_114760040.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PUP56_RS05470 (PUP56_05470) 1233007..1234170 - 1164 WP_009042150.1 type III PLP-dependent enzyme -
PUP56_RS05475 (PUP56_05475) 1234723..1235880 - 1158 WP_062823682.1 ABC transporter ATP-binding protein -
PUP56_RS05480 (PUP56_05480) 1235877..1236530 - 654 WP_007923833.1 ABC transporter permease -
PUP56_RS05485 (PUP56_05485) 1236545..1237438 - 894 WP_114760039.1 glycine betaine ABC transporter substrate-binding protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-89)

Antitoxin

Ribbon-helix-helix protein, CopG

(7-44)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10781.39 Da        Isoelectric Point: 9.6923

>T272851 WP_114760040.1 NZ_CP118147:1232654-1232932 [Pseudomonas chlororaphis]
VRELKWTSKALSDLARLFEFLAPVNRSVAARTVQSLTQAPDTLLTNPRIGEQLEEFQPRDVRRLLVGPYEMRYEIQDATL
YILRVWHVRGDR

Download         Length: 279 bp

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9768.17 Da        Isoelectric Point: 5.6088

>AT272851 WP_009042148.1 NZ_CP118147:1232394-1232657 [Pseudomonas chlororaphis]
MTATKVLTAHVPLELADKVDQMASRLERSRGWIVKQALVAWVDQEEERSRLTHEALADVDAGRVIDHQAVQAWAESLMND
KPLPVPK

Download         Length: 264 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References