Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1693261..1693529 | Replicon | chromosome |
| Accession | NC_017632 | ||
| Organism | Escherichia coli UM146 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1693389..1693491 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1693261..1693529 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UM146_RS08180 | 1689815..1690477 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| UM146_RS08185 | 1690500..1691156 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| UM146_RS08190 | 1691258..1691488 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| UM146_RS08195 | 1691627..1692001 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| UM146_RS08200 | 1692005..1692877 | + | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| UM146_RS08205 | 1692890..1693231 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 1693261..1693529 | - | 269 | - | - | Antitoxin |
| - | 1693389..1693491 | + | 103 | - | - | Toxin |
| UM146_RS08215 | 1693626..1694282 | + | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| UM146_RS08220 | 1694283..1694474 | - | 192 | WP_001296140.1 | YebW family protein | - |
| UM146_RS08225 | 1694579..1694815 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| UM146_RS08230 | 1694933..1696372 | - | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T27285 NC_017632:1693389-1693491 [Escherichia coli UM146]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT27285 NC_017632:c1693529-1693261 [Escherichia coli UM146]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
