Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
Location | 1231729..1232267 | Replicon | chromosome |
Accession | NZ_CP118146 | ||
Organism | Pseudomonas chlororaphis strain ATCC 174152 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | PUP66_RS05465 | Protein ID | WP_114760040.1 |
Coordinates | 1231989..1232267 (+) | Length | 93 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | PUP66_RS05460 | Protein ID | WP_009042148.1 |
Coordinates | 1231729..1231992 (+) | Length | 88 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PUP66_RS05445 (PUP66_05445) | 1227719..1229992 | - | 2274 | WP_114760042.1 | TonB-dependent siderophore receptor | - |
PUP66_RS05450 (PUP66_05450) | 1230198..1230878 | + | 681 | WP_009042146.1 | Fe2+-dependent dioxygenase | - |
PUP66_RS05455 (PUP66_05455) | 1230882..1231667 | + | 786 | WP_114760041.1 | tetratricopeptide repeat protein | - |
PUP66_RS05460 (PUP66_05460) | 1231729..1231992 | + | 264 | WP_009042148.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
PUP66_RS05465 (PUP66_05465) | 1231989..1232267 | + | 279 | WP_114760040.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
PUP66_RS05470 (PUP66_05470) | 1232342..1233505 | - | 1164 | WP_009042150.1 | type III PLP-dependent enzyme | - |
PUP66_RS05475 (PUP66_05475) | 1234058..1235215 | - | 1158 | WP_062823682.1 | ABC transporter ATP-binding protein | - |
PUP66_RS05480 (PUP66_05480) | 1235212..1235865 | - | 654 | WP_007923833.1 | ABC transporter permease | - |
PUP66_RS05485 (PUP66_05485) | 1235880..1236773 | - | 894 | WP_114760039.1 | glycine betaine ABC transporter substrate-binding protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10781.39 Da Isoelectric Point: 9.6923
>T272844 WP_114760040.1 NZ_CP118146:1231989-1232267 [Pseudomonas chlororaphis]
VRELKWTSKALSDLARLFEFLAPVNRSVAARTVQSLTQAPDTLLTNPRIGEQLEEFQPRDVRRLLVGPYEMRYEIQDATL
YILRVWHVRGDR
VRELKWTSKALSDLARLFEFLAPVNRSVAARTVQSLTQAPDTLLTNPRIGEQLEEFQPRDVRRLLVGPYEMRYEIQDATL
YILRVWHVRGDR
Download Length: 279 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|
Antitoxin
Source | ID | Structure |
---|