Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 439756..440272 Replicon chromosome
Accession NZ_CP118144
Organism Pseudomonas chlororaphis strain ATCC 174181

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PUP51_RS01935 Protein ID WP_274331216.1
Coordinates 439991..440272 (+) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A285F0M2
Locus tag PUP51_RS01930 Protein ID WP_062824057.1
Coordinates 439756..440001 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PUP51_RS01905 (PUP51_01905) 435510..436514 + 1005 WP_274331212.1 sulfotransferase family protein -
PUP51_RS01910 (PUP51_01910) 436480..437238 - 759 WP_007932057.1 slipin family protein -
PUP51_RS01915 (PUP51_01915) 437240..438625 - 1386 WP_274331214.1 nodulation protein NfeD -
PUP51_RS01920 (PUP51_01920) 438849..439310 + 462 WP_062824058.1 YbaK/EbsC family protein -
PUP51_RS01925 (PUP51_01925) 439448..439693 + 246 WP_009041599.1 DUF2789 domain-containing protein -
PUP51_RS01930 (PUP51_01930) 439756..440001 + 246 WP_062824057.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
PUP51_RS01935 (PUP51_01935) 439991..440272 + 282 WP_274331216.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PUP51_RS01940 (PUP51_01940) 440404..440832 + 429 WP_085533251.1 MarR family transcriptional regulator -
PUP51_RS01945 (PUP51_01945) 440829..442913 + 2085 WP_274331218.1 FUSC family protein -
PUP51_RS01950 (PUP51_01950) 442910..443119 + 210 WP_007932080.1 DUF1656 domain-containing protein -
PUP51_RS01955 (PUP51_01955) 443116..444012 + 897 WP_274301765.1 HlyD family secretion protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-82)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-70)


Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10927.80 Da        Isoelectric Point: 10.4588

>T272825 WP_274331216.1 NZ_CP118144:439991-440272 [Pseudomonas chlororaphis]
MTYKLQFLPSARKEWDKLGHTLREQFKKKLAERLEMPRVSADALHGMADCYKIKLKASDYRLVYQVIEDQVVVSVVAVGK
RERSAVYERARKR

Download         Length: 282 bp

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 8822.17 Da        Isoelectric Point: 5.0216

>AT272825 WP_062824057.1 NZ_CP118144:439756-440001 [Pseudomonas chlororaphis]
MQSVLADKAVSVSELKKNPSAVLSGAHGGPVAVLNHNRVMGYMVPADVFEAMMERLDDLELAEIVRARRHETPVPVNLDD
L

Download         Length: 246 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A285F0M2

References