Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | PumAB/COG3657-dnstrm_HI1420 |
Location | 3059018..3059607 | Replicon | chromosome |
Accession | NZ_CP118135 | ||
Organism | Pseudomonas chlororaphis strain NCCB 820532 |
Toxin (Protein)
Gene name | PumA | Uniprot ID | A0A285IHJ3 |
Locus tag | PUP76_RS14060 | Protein ID | WP_062824477.1 |
Coordinates | 3059018..3059317 (+) | Length | 100 a.a. |
Antitoxin (Protein)
Gene name | PumB | Uniprot ID | - |
Locus tag | PUP76_RS14065 | Protein ID | WP_007924096.1 |
Coordinates | 3059314..3059607 (+) | Length | 98 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PUP76_RS14030 (PUP76_14030) | 3054497..3055384 | - | 888 | WP_053262814.1 | (2E,6E)-farnesyl diphosphate synthase | - |
PUP76_RS14035 (PUP76_14035) | 3055381..3055623 | - | 243 | WP_007924102.1 | exodeoxyribonuclease VII small subunit | - |
PUP76_RS14040 (PUP76_14040) | 3055849..3056937 | + | 1089 | WP_253366025.1 | copper-containing nitrite reductase | - |
PUP76_RS14045 (PUP76_14045) | 3057005..3057304 | + | 300 | WP_007924100.1 | helix-turn-helix transcriptional regulator | - |
PUP76_RS14050 (PUP76_14050) | 3057362..3058372 | + | 1011 | WP_274302154.1 | NAD(P)-dependent alcohol dehydrogenase | - |
PUP76_RS14055 (PUP76_14055) | 3058397..3058846 | - | 450 | WP_009045812.1 | DUF3828 domain-containing protein | - |
PUP76_RS14060 (PUP76_14060) | 3059018..3059317 | + | 300 | WP_062824477.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
PUP76_RS14065 (PUP76_14065) | 3059314..3059607 | + | 294 | WP_007924096.1 | putative addiction module antidote protein | Antitoxin |
PUP76_RS14070 (PUP76_14070) | 3059723..3060115 | - | 393 | WP_274302033.1 | hypothetical protein | - |
PUP76_RS14075 (PUP76_14075) | 3060930..3061457 | - | 528 | WP_009045807.1 | inorganic diphosphatase | - |
PUP76_RS14080 (PUP76_14080) | 3061722..3062531 | - | 810 | WP_062824480.1 | zinc-dependent peptidase | - |
PUP76_RS14085 (PUP76_14085) | 3062537..3063193 | - | 657 | WP_007924093.1 | DedA family protein | - |
PUP76_RS14090 (PUP76_14090) | 3063447..3063905 | - | 459 | WP_009045805.1 | GNAT family N-acetyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11261.01 Da Isoelectric Point: 10.8652
>T272770 WP_062824477.1 NZ_CP118135:3059018-3059317 [Pseudomonas chlororaphis]
MIEIKQTATFMEWENRLKDSRARALIAARIFRLANGLAGDVSPVGEGVSELRIHYGPGYRVYFQQRGLQLVILLCGGDKS
RQGRDIELAKQLARRWSRS
MIEIKQTATFMEWENRLKDSRARALIAARIFRLANGLAGDVSPVGEGVSELRIHYGPGYRVYFQQRGLQLVILLCGGDKS
RQGRDIELAKQLARRWSRS
Download Length: 300 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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