Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
| Location | 33304..33863 | Replicon | plasmid unnamed1 |
| Accession | NZ_CP118015 | ||
| Organism | Escherichia coli strain B-766 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | E0J3F0 |
| Locus tag | PT280_RS24970 | Protein ID | WP_000421267.1 |
| Coordinates | 33304..33579 (-) | Length | 92 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | U9Y625 |
| Locus tag | PT280_RS24975 | Protein ID | WP_001178087.1 |
| Coordinates | 33579..33863 (-) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT280_RS24940 | 28638..29324 | - | 687 | Protein_31 | colicin-Ia domain protein | - |
| PT280_RS24945 | 29602..30948 | - | 1347 | WP_001132027.1 | protein YagA | - |
| PT280_RS24950 | 31302..31904 | + | 603 | WP_000517697.1 | ProQ/FINO family protein | - |
| PT280_RS24955 | 31960..32454 | + | 495 | WP_001350009.1 | hypothetical protein | - |
| PT280_RS24960 | 32454..32720 | + | 267 | WP_000627834.1 | hypothetical protein | - |
| PT280_RS24965 | 32989..33198 | - | 210 | Protein_36 | hypothetical protein | - |
| PT280_RS24970 | 33304..33579 | - | 276 | WP_000421267.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| PT280_RS24975 | 33579..33863 | - | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
| PT280_RS24980 | 34767..35798 | - | 1032 | WP_000907868.1 | plasmid replication initiator RepA | - |
| PT280_RS24985 | 36755..36910 | + | 156 | Protein_40 | ash family protein | - |
| PT280_RS24990 | 36951..37238 | + | 288 | WP_000074853.1 | hypothetical protein | - |
| PT280_RS24995 | 37680..38213 | + | 534 | WP_001350011.1 | transcription termination/antitermination NusG family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | faeG / faeF / faeE / faeD / faeC | 1..122614 | 122614 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|