Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4233457..4233728 | Replicon | chromosome |
| Accession | NZ_CP117962 | ||
| Organism | Escherichia coli strain JM109 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4233587..4233690 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4233457..4233728 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT299_RS21670 | 4230012..4230674 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| PT299_RS21675 | 4230698..4231354 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PT299_RS21680 | 4231456..4231686 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PT299_RS21685 | 4231825..4232199 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PT299_RS21690 | 4232203..4233075 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| PT299_RS21695 | 4233088..4233429 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 4233457..4233728 | - | 272 | - | - | Antitoxin |
| - | 4233587..4233690 | + | 104 | - | - | Toxin |
| PT299_RS21700 | 4233825..4234481 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| PT299_RS21705 | 4234482..4234673 | - | 192 | WP_000457842.1 | YebW family protein | - |
| PT299_RS21710 | 4234778..4235014 | - | 237 | WP_001295499.1 | YebV family protein | - |
| PT299_RS21715 | 4235132..4236571 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272560 NZ_CP117962:4233587-4233690 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT272560 NZ_CP117962:c4233728-4233457 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
