Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1805123..1805394 | Replicon | chromosome |
| Accession | NZ_CP117959 | ||
| Organism | Escherichia coli strain B-2207 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1805161..1805264 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1805123..1805394 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PT284_RS09680 | 1802280..1803719 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PT284_RS09685 | 1803837..1804073 | + | 237 | WP_001295499.1 | YebV family protein | - |
| PT284_RS09690 | 1804178..1804369 | + | 192 | WP_000457842.1 | YebW family protein | - |
| PT284_RS09695 | 1804370..1805026 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1805123..1805394 | + | 272 | - | - | Antitoxin |
| - | 1805161..1805264 | - | 104 | - | - | Toxin |
| PT284_RS09700 | 1805422..1805763 | - | 342 | WP_000976476.1 | YebY family protein | - |
| PT284_RS09705 | 1805776..1806649 | - | 874 | Protein_1762 | copper homeostasis membrane protein CopD | - |
| PT284_RS09710 | 1806653..1807027 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| PT284_RS09715 | 1807166..1807396 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| PT284_RS09720 | 1807498..1808154 | + | 657 | WP_066009212.1 | carbon-nitrogen hydrolase family protein YobB | - |
| PT284_RS09725 | 1808178..1808840 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272497 NZ_CP117959:c1805264-1805161 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT272497 NZ_CP117959:1805123-1805394 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
