Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966179..1966319 | Replicon | chromosome |
| Accession | NZ_CP117886 | ||
| Organism | Serratia ureilytica strain KML.E1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966223..1966319 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966179..1966319 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PTZ17_RS09440 (PTZ17_09440) | 1961401..1961826 | + | 426 | WP_033642714.1 | RNA polymerase-binding protein DksA | - |
| PTZ17_RS09445 (PTZ17_09445) | 1962004..1962957 | + | 954 | WP_033644252.1 | prolyl aminopeptidase | - |
| PTZ17_RS09450 (PTZ17_09450) | 1962988..1963218 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| PTZ17_RS09455 (PTZ17_09455) | 1963559..1964077 | + | 519 | WP_033642716.1 | non-heme ferritin | - |
| PTZ17_RS09460 (PTZ17_09460) | 1964370..1964786 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| PTZ17_RS09465 (PTZ17_09465) | 1964789..1965670 | + | 882 | WP_047575799.1 | copper homeostasis membrane protein CopD | - |
| PTZ17_RS09470 (PTZ17_09470) | 1965740..1966081 | + | 342 | WP_274255917.1 | YebY family protein | - |
| - | 1966179..1966319 | - | 141 | - | - | Antitoxin |
| - | 1966223..1966319 | + | 97 | - | - | Toxin |
| PTZ17_RS09475 (PTZ17_09475) | 1966572..1966976 | + | 405 | WP_103101217.1 | hypothetical protein | - |
| PTZ17_RS09480 (PTZ17_09480) | 1966973..1967191 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| PTZ17_RS09485 (PTZ17_09485) | 1967266..1967610 | - | 345 | WP_033642719.1 | hypothetical protein | - |
| PTZ17_RS09490 (PTZ17_09490) | 1967859..1968209 | + | 351 | WP_004940949.1 | DUF4377 domain-containing protein | - |
| PTZ17_RS09495 (PTZ17_09495) | 1968260..1968562 | - | 303 | WP_016928136.1 | hypothetical protein | - |
| PTZ17_RS09500 (PTZ17_09500) | 1968562..1969338 | - | 777 | WP_157993238.1 | DUF4225 domain-containing protein | - |
| PTZ17_RS09505 (PTZ17_09505) | 1969615..1970814 | + | 1200 | WP_033642722.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T272463 NZ_CP117886:1966223-1966319 [Serratia ureilytica]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT272463 NZ_CP117886:c1966319-1966179 [Serratia ureilytica]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
