Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 4792249..4792784 Replicon chromosome
Accession NZ_CP117874
Organism Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag PSR30_RS21515 Protein ID WP_039533010.1
Coordinates 4792497..4792784 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q6DB37
Locus tag PSR30_RS21510 Protein ID WP_010281712.1
Coordinates 4792249..4792500 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PSR30_RS21490 (PSR30_21490) 4788218..4789351 + 1134 WP_274214576.1 alkylhydroperoxidase domain protein -
PSR30_RS21495 (PSR30_21495) 4789394..4790017 - 624 WP_040035577.1 LysE family translocator -
PSR30_RS21500 (PSR30_21500) 4790296..4791051 + 756 WP_274214577.1 thiol:disulfide interchange protein DsbG -
PSR30_RS21505 (PSR30_21505) 4791086..4791991 - 906 WP_274214578.1 siderophore-interacting protein -
PSR30_RS21510 (PSR30_21510) 4792249..4792500 + 252 WP_010281712.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
PSR30_RS21515 (PSR30_21515) 4792497..4792784 + 288 WP_039533010.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PSR30_RS21520 (PSR30_21520) 4792887..4794239 - 1353 WP_040032226.1 glutathione-disulfide reductase -
PSR30_RS21525 (PSR30_21525) 4794368..4795210 - 843 WP_039363917.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
PSR30_RS21530 (PSR30_21530) 4795429..4796157 + 729 WP_040032224.1 DUF1266 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11128.20 Da        Isoelectric Point: 10.2532

>T272450 WP_039533010.1 NZ_CP117874:4792497-4792784 [Pectobacterium carotovorum subsp. carotovorum]
MSYRVKFREDALKEWLKLDKTIQQQFAKKLKECCENPHIPAAKLRGMKDCYKIKLRASGFRLVYEVIDDVLIIAVVAVGK
RERSGVYHLASERMR

Download         Length: 288 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9117.47 Da        Isoelectric Point: 4.0637

>AT272450 WP_010281712.1 NZ_CP117874:4792249-4792500 [Pectobacterium carotovorum subsp. carotovorum]
MPNIILSDTSASVSELKKNPMATVNAGDGLPVAILNRNQPAFYCIPADLYEKMLDALDDQELVKLIGERKNQPLVDVDLD
SFL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A0M2EZP0

References