272449

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tad-ata/COG5606-COG4679
Location 3488965..3489628 Replicon chromosome
Accession NZ_CP117874
Organism Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2

Toxin (Protein)


Gene name tad Uniprot ID -
Locus tag PSR30_RS15655 Protein ID WP_261854778.1
Coordinates 3488965..3489309 (+) Length 115 a.a.

Antitoxin (Protein)


Gene name ata Uniprot ID -
Locus tag PSR30_RS15660 Protein ID WP_039538898.1
Coordinates 3489311..3489628 (+) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PSR30_RS15630 (PSR30_15630) 3484530..3485660 + 1131 WP_274214205.1 linear amide C-N hydrolase -
PSR30_RS15635 (PSR30_15635) 3485770..3486078 - 309 WP_226293892.1 YciI family protein -
PSR30_RS15640 (PSR30_15640) 3486118..3486738 - 621 WP_182814007.1 FMN-dependent NADH-azoreductase -
PSR30_RS15645 (PSR30_15645) 3486773..3487546 - 774 WP_274214206.1 alpha/beta hydrolase -
PSR30_RS15650 (PSR30_15650) 3487714..3488733 + 1020 WP_274214207.1 helix-turn-helix domain-containing protein -
PSR30_RS15655 (PSR30_15655) 3488965..3489309 + 345 WP_261854778.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
PSR30_RS15660 (PSR30_15660) 3489311..3489628 + 318 WP_039538898.1 helix-turn-helix transcriptional regulator Antitoxin
PSR30_RS15665 (PSR30_15665) 3489717..3489932 - 216 WP_010279992.1 helix-turn-helix transcriptional regulator -
PSR30_RS15670 (PSR30_15670) 3490284..3490601 - 318 WP_029368766.1 hypothetical protein -
PSR30_RS15675 (PSR30_15675) 3490618..3490932 - 315 WP_161509660.1 hypothetical protein -
PSR30_RS15680 (PSR30_15680) 3491709..3492785 - 1077 WP_274214208.1 RES family NAD+ phosphorylase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(12-105)

Antitoxin

Cro/C1-type helix-turn-helix domain

(34-86)


Sequences

Toxin        


Download         Length: 115 a.a.        Molecular weight: 12410.16 Da        Isoelectric Point: 9.7826

>T272449 WP_261854778.1 NZ_CP117874:3488965-3489309 [Pectobacterium carotovorum subsp. carotovorum]
MKSLYWVGSSKKDLQSLPADVQDVFGYALHLAQTGGKHTQAKPLKGFGGAGVLEVVEDYIGDTYRAVYTVKFGEAVYVLH
AFQKKSSSGIATPKPDMNTIRERLKTAEHHAKGA

Download         Length: 345 bp

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11448.48 Da        Isoelectric Point: 10.6133

>AT272449 WP_039538898.1 NZ_CP117874:3489311-3489628 [Pectobacterium carotovorum subsp. carotovorum]
MSQDIEVSSGNVYADLGNLHAEDMLVKAQLATLISSIIKSRRLTQAEAAKLLGMPQPKLSNLLRGQFRGISETKMLECLT
KLGRDIQIVVGKPRRTPGSVKVVFA

Download         Length: 318 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References