Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ykfI-yfjZ/CbtA-CbeA
Location 3378548..3379273 Replicon chromosome
Accession NZ_CP117874
Organism Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2

Toxin (Protein)


Gene name ykfI Uniprot ID -
Locus tag PSR30_RS15185 Protein ID WP_274214161.1
Coordinates 3378953..3379273 (+) Length 107 a.a.

Antitoxin (Protein)


Gene name yfjZ Uniprot ID -
Locus tag PSR30_RS15180 Protein ID WP_274214160.1
Coordinates 3378548..3378883 (+) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PSR30_RS15145 (PSR30_15145) 3373580..3374374 + 795 WP_274214154.1 hypothetical protein -
PSR30_RS15150 (PSR30_15150) 3374497..3375372 + 876 WP_274214155.1 GTPase family protein -
PSR30_RS15155 (PSR30_15155) 3375742..3376440 + 699 WP_274214156.1 DeoR family transcriptional regulator -
PSR30_RS15160 (PSR30_15160) 3376538..3377191 + 654 WP_274214157.1 hypothetical protein -
PSR30_RS15165 (PSR30_15165) 3377227..3377700 + 474 WP_274214158.1 hypothetical protein -
PSR30_RS15170 (PSR30_15170) 3377717..3377950 + 234 WP_039494636.1 membrane protein -
PSR30_RS15175 (PSR30_15175) 3378035..3378502 + 468 WP_274214159.1 DNA repair protein RadC -
PSR30_RS15180 (PSR30_15180) 3378548..3378883 + 336 WP_274214160.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
PSR30_RS15185 (PSR30_15185) 3378953..3379273 + 321 WP_274214161.1 TA system toxin CbtA family protein Toxin
PSR30_RS15190 (PSR30_15190) 3379391..3380224 + 834 WP_274214162.1 DUF4942 domain-containing protein -
PSR30_RS15195 (PSR30_15195) 3380785..3383169 + 2385 WP_274214163.1 dynamin family protein -
PSR30_RS15200 (PSR30_15200) 3383166..3384071 + 906 WP_274214164.1 diguanylate cyclase regulator RdcB family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-105)

Antitoxin

Antitoxin CbeA

(7-106)


Sequences

Toxin        


Download         Length: 107 a.a.        Molecular weight: 12045.77 Da        Isoelectric Point: 4.7768

>T272448 WP_274214161.1 NZ_CP117874:3378953-3379273 [Pectobacterium carotovorum subsp. carotovorum]
MQTSPAIPPREDNPCPSPIAVWQQLLTYLLEKHYGLTLNDTPLCEENVIQEHIDAGVTLVNTVNFLVEKYELVRIDRNGF
NWQEQSPFLTAVDVLRARRATGLLKA

Download         Length: 321 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12308.99 Da        Isoelectric Point: 6.4640

>AT272448 WP_274214160.1 NZ_CP117874:3378548-3378883 [Pectobacterium carotovorum subsp. carotovorum]
MPSSDTPEWGLKCAVTPHFGARLVQEGHRLHYLADRASIVGTFSKTVAQSLERCFPELIKQLEQKLRTGELNPRQQGCVT
LHCNEWTCEADTLGSVGYVYIVIYPSSAAAE

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References