Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ykfI-yfjZ/CbtA-CbeA
Location 3023662..3024387 Replicon chromosome
Accession NZ_CP117874
Organism Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2

Toxin (Protein)


Gene name ykfI Uniprot ID -
Locus tag PSR30_RS13565 Protein ID WP_274214043.1
Coordinates 3023662..3023982 (-) Length 107 a.a.

Antitoxin (Protein)


Gene name yfjZ Uniprot ID -
Locus tag PSR30_RS13570 Protein ID WP_226305970.1
Coordinates 3024052..3024387 (-) Length 112 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PSR30_RS13540 (PSR30_13540) 3018965..3020365 + 1401 WP_274215456.1 diguanylate cyclase -
PSR30_RS13545 (PSR30_13545) 3020641..3020859 + 219 WP_274214039.1 KTSC domain-containing protein -
PSR30_RS13550 (PSR30_13550) 3021085..3021441 + 357 WP_274214040.1 hypothetical protein -
PSR30_RS13555 (PSR30_13555) 3022379..3022576 - 198 WP_274214041.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
PSR30_RS13560 (PSR30_13560) 3022710..3023543 - 834 WP_274214042.1 DUF4942 domain-containing protein -
PSR30_RS13565 (PSR30_13565) 3023662..3023982 - 321 WP_274214043.1 TA system toxin CbtA family protein Toxin
PSR30_RS13570 (PSR30_13570) 3024052..3024387 - 336 WP_226305970.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
PSR30_RS13575 (PSR30_13575) 3024427..3024900 - 474 WP_274214044.1 DNA repair protein RadC -
PSR30_RS13580 (PSR30_13580) 3024978..3025274 - 297 WP_274214045.1 hypothetical protein -
PSR30_RS13585 (PSR30_13585) 3025385..3026227 - 843 WP_274214046.1 hypothetical protein -
PSR30_RS13590 (PSR30_13590) 3026474..3026938 - 465 WP_040031747.1 hypothetical protein -
PSR30_RS13595 (PSR30_13595) 3027390..3028478 - 1089 WP_274214047.1 hypothetical protein -
PSR30_RS13600 (PSR30_13600) 3028880..3029086 + 207 WP_040031749.1 AlpA family phage regulatory protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-105)

Antitoxin

Antitoxin CbeA

(7-106)


Sequences

Toxin        


Download         Length: 107 a.a.        Molecular weight: 12036.72 Da        Isoelectric Point: 5.0744

>T272447 WP_274214043.1 NZ_CP117874:c3023982-3023662 [Pectobacterium carotovorum subsp. carotovorum]
MQPSPTIPSREDNPCASPIAVWQQLLTYLLEKHYGLTLNDTPFCEKSEIQEHIDAGITLVNAVNFLVEKYELVRIDHNGF
NWQEQSPFLTAVDVLRARRATGLLKA

Download         Length: 321 bp

Antitoxin


Download         Length: 112 a.a.        Molecular weight: 12260.99 Da        Isoelectric Point: 7.0582

>AT272447 WP_226305970.1 NZ_CP117874:c3024387-3024052 [Pectobacterium carotovorum subsp. carotovorum]
MPSSDTPEWGLKCAITPRFGARLVQEGNRLHYLADRASVVGTFSKTGAQSLERCFPELIKQLEQKLRTGELNPRQQGCVT
LHCNEWACEADTLGSVGYVYIVIYPTSAATL

Download         Length: 336 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References