Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | ykfI-yfjZ/CbtA-CbeA |
Location | 3023662..3024387 | Replicon | chromosome |
Accession | NZ_CP117874 | ||
Organism | Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2 |
Toxin (Protein)
Gene name | ykfI | Uniprot ID | - |
Locus tag | PSR30_RS13565 | Protein ID | WP_274214043.1 |
Coordinates | 3023662..3023982 (-) | Length | 107 a.a. |
Antitoxin (Protein)
Gene name | yfjZ | Uniprot ID | - |
Locus tag | PSR30_RS13570 | Protein ID | WP_226305970.1 |
Coordinates | 3024052..3024387 (-) | Length | 112 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PSR30_RS13540 (PSR30_13540) | 3018965..3020365 | + | 1401 | WP_274215456.1 | diguanylate cyclase | - |
PSR30_RS13545 (PSR30_13545) | 3020641..3020859 | + | 219 | WP_274214039.1 | KTSC domain-containing protein | - |
PSR30_RS13550 (PSR30_13550) | 3021085..3021441 | + | 357 | WP_274214040.1 | hypothetical protein | - |
PSR30_RS13555 (PSR30_13555) | 3022379..3022576 | - | 198 | WP_274214041.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
PSR30_RS13560 (PSR30_13560) | 3022710..3023543 | - | 834 | WP_274214042.1 | DUF4942 domain-containing protein | - |
PSR30_RS13565 (PSR30_13565) | 3023662..3023982 | - | 321 | WP_274214043.1 | TA system toxin CbtA family protein | Toxin |
PSR30_RS13570 (PSR30_13570) | 3024052..3024387 | - | 336 | WP_226305970.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
PSR30_RS13575 (PSR30_13575) | 3024427..3024900 | - | 474 | WP_274214044.1 | DNA repair protein RadC | - |
PSR30_RS13580 (PSR30_13580) | 3024978..3025274 | - | 297 | WP_274214045.1 | hypothetical protein | - |
PSR30_RS13585 (PSR30_13585) | 3025385..3026227 | - | 843 | WP_274214046.1 | hypothetical protein | - |
PSR30_RS13590 (PSR30_13590) | 3026474..3026938 | - | 465 | WP_040031747.1 | hypothetical protein | - |
PSR30_RS13595 (PSR30_13595) | 3027390..3028478 | - | 1089 | WP_274214047.1 | hypothetical protein | - |
PSR30_RS13600 (PSR30_13600) | 3028880..3029086 | + | 207 | WP_040031749.1 | AlpA family phage regulatory protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 107 a.a. Molecular weight: 12036.72 Da Isoelectric Point: 5.0744
>T272447 WP_274214043.1 NZ_CP117874:c3023982-3023662 [Pectobacterium carotovorum subsp. carotovorum]
MQPSPTIPSREDNPCASPIAVWQQLLTYLLEKHYGLTLNDTPFCEKSEIQEHIDAGITLVNAVNFLVEKYELVRIDHNGF
NWQEQSPFLTAVDVLRARRATGLLKA
MQPSPTIPSREDNPCASPIAVWQQLLTYLLEKHYGLTLNDTPFCEKSEIQEHIDAGITLVNAVNFLVEKYELVRIDHNGF
NWQEQSPFLTAVDVLRARRATGLLKA
Download Length: 321 bp
Antitoxin
Download Length: 112 a.a. Molecular weight: 12260.99 Da Isoelectric Point: 7.0582
>AT272447 WP_226305970.1 NZ_CP117874:c3024387-3024052 [Pectobacterium carotovorum subsp. carotovorum]
MPSSDTPEWGLKCAITPRFGARLVQEGNRLHYLADRASVVGTFSKTGAQSLERCFPELIKQLEQKLRTGELNPRQQGCVT
LHCNEWACEADTLGSVGYVYIVIYPTSAATL
MPSSDTPEWGLKCAITPRFGARLVQEGNRLHYLADRASVVGTFSKTGAQSLERCFPELIKQLEQKLRTGELNPRQQGCVT
LHCNEWACEADTLGSVGYVYIVIYPTSAATL
Download Length: 336 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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