Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relB-parE/ParE-RHH |
Location | 477300..477883 | Replicon | chromosome |
Accession | NZ_CP117874 | ||
Organism | Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2 |
Toxin (Protein)
Gene name | parE | Uniprot ID | A0A7V8PTK4 |
Locus tag | PSR30_RS02155 | Protein ID | WP_010296214.1 |
Coordinates | 477578..477883 (+) | Length | 102 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | A0A7V8PT23 |
Locus tag | PSR30_RS02150 | Protein ID | WP_010296210.1 |
Coordinates | 477300..477590 (+) | Length | 97 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
PSR30_RS02130 (PSR30_02130) | 472434..473696 | - | 1263 | WP_010296200.1 | L-rhamnose isomerase | - |
PSR30_RS02135 (PSR30_02135) | 473693..475183 | - | 1491 | WP_010296202.1 | rhamnulokinase | - |
PSR30_RS02140 (PSR30_02140) | 475520..476359 | + | 840 | WP_010296204.1 | HTH-type transcriptional activator RhaS | - |
PSR30_RS02145 (PSR30_02145) | 476384..477238 | + | 855 | WP_039539617.1 | helix-turn-helix domain-containing protein | - |
PSR30_RS02150 (PSR30_02150) | 477300..477590 | + | 291 | WP_010296210.1 | ribbon-helix-helix protein, CopG family | Antitoxin |
PSR30_RS02155 (PSR30_02155) | 477578..477883 | + | 306 | WP_010296214.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
PSR30_RS02160 (PSR30_02160) | 478003..479709 | - | 1707 | WP_274214738.1 | ABC transporter ATP-binding protein | - |
PSR30_RS02165 (PSR30_02165) | 479706..480572 | - | 867 | WP_040031931.1 | ABC transporter permease | - |
PSR30_RS02170 (PSR30_02170) | 480565..481524 | - | 960 | WP_029367586.1 | ABC transporter permease | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 102 a.a. Molecular weight: 11576.44 Da Isoelectric Point: 9.8325
>T272441 WP_010296214.1 NZ_CP117874:477578-477883 [Pectobacterium carotovorum subsp. carotovorum]
MPQVIVSERARRDLQRLQDFLKNKNALAAKKAAEVLIRGIRQLEALPNIGRPVEHLPLEYQELVIEFGSSGYVMLYRHDE
LTGRVVILTVKHQKEAGYQNP
MPQVIVSERARRDLQRLQDFLKNKNALAAKKAAEVLIRGIRQLEALPNIGRPVEHLPLEYQELVIEFGSSGYVMLYRHDE
LTGRVVILTVKHQKEAGYQNP
Download Length: 306 bp
Antitoxin
Download Length: 97 a.a. Molecular weight: 11064.13 Da Isoelectric Point: 4.7692
>AT272441 WP_010296210.1 NZ_CP117874:477300-477590 [Pectobacterium carotovorum subsp. carotovorum]
MADTTRQTTTLRIDQDIKERLKTLADDRNSSAHALMLEAIAEYVEREEKRSQYRKEALAAWEDYQDTGKHITADETVTWL
ESWGSGHEQDAPACHK
MADTTRQTTTLRIDQDIKERLKTLADDRNSSAHALMLEAIAEYVEREEKRSQYRKEALAAWEDYQDTGKHITADETVTWL
ESWGSGHEQDAPACHK
Download Length: 291 bp
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7V8PTK4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7V8PT23 |