Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ataRT/DUF1778(antitoxin)
Location 134200..134951 Replicon chromosome
Accession NZ_CP117874
Organism Pectobacterium carotovorum subsp. carotovorum strain ZJ-4-2

Toxin (Protein)


Gene name ataT Uniprot ID -
Locus tag PSR30_RS00565 Protein ID WP_125233253.1
Coordinates 134469..134951 (+) Length 161 a.a.

Antitoxin (Protein)


Gene name ataR Uniprot ID -
Locus tag PSR30_RS00560 Protein ID WP_125233370.1
Coordinates 134200..134478 (+) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PSR30_RS00535 (PSR30_00535) 129704..130360 - 657 WP_274214654.1 aldolase -
PSR30_RS00540 (PSR30_00540) 130357..131631 - 1275 WP_274214655.1 four-carbon acid sugar kinase family protein -
PSR30_RS00545 (PSR30_00545) 131628..132542 - 915 WP_249649106.1 NAD(P)-dependent oxidoreductase -
PSR30_RS00550 (PSR30_00550) 132881..133642 + 762 WP_010303245.1 DNA-binding transcriptional repressor YgbI -
PSR30_RS00555 (PSR30_00555) 133655..134089 + 435 WP_274214656.1 hypothetical protein -
PSR30_RS00560 (PSR30_00560) 134200..134478 + 279 WP_125233370.1 DUF1778 domain-containing protein Antitoxin
PSR30_RS00565 (PSR30_00565) 134469..134951 + 483 WP_125233253.1 GNAT family N-acetyltransferase Toxin
PSR30_RS00570 (PSR30_00570) 135084..136418 + 1335 WP_274214657.1 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB -
PSR30_RS00575 (PSR30_00575) 136491..137378 + 888 WP_010303217.1 sn-glycerol-3-phosphate ABC transporter permease UgpA -
PSR30_RS00580 (PSR30_00580) 137375..138220 + 846 WP_039491922.1 sn-glycerol-3-phosphate ABC transporter permease UgpE -
PSR30_RS00585 (PSR30_00585) 138246..139319 + 1074 WP_010303211.1 sn-glycerol-3-phosphate import ATP-binding protein UgpC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(39-144)

Antitoxin

Vibrio phage ICP1, Orf50

(10-87)


Sequences

Toxin        


Download         Length: 161 a.a.        Molecular weight: 17391.21 Da        Isoelectric Point: 9.3654

>T272436 WP_125233253.1 NZ_CP117874:134469-134951 [Pectobacterium carotovorum subsp. carotovorum]
MGITAPGPLSAGHNLAEFCSQEPSLNEWLKKKALKNHSAGISRVYVICAEGTHQVIGYYCLSTGSVQRNTAPGAYRRNAP
ESLPVIVLGRLAIDQAYSGKGLGVALLKDAIFRTENIALQVGVRALVVHALDENVRNFYLKFAFDPSPVQPLMLLYPIKI

Download         Length: 483 bp

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 10623.11 Da        Isoelectric Point: 4.4463

>AT272436 WP_125233370.1 NZ_CP117874:134200-134478 [Pectobacterium carotovorum subsp. carotovorum]
MKPETKEAPINIRAKASQRDLIDMAANLVSKSRTDFMLEAACREAQDILLDQRLFILDNEQFDEFLAELDAPITAERQAR
INELMSRKSPWE

Download         Length: 279 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References