Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2138437..2138605 | Replicon | chromosome |
| Accession | NZ_CP117853 | ||
| Organism | Klebsiella michiganensis strain 2020CK-00215 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2138495..2138598 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2138437..2138605 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PUO96_RS10140 (PUO96_10140) | 2133564..2135624 | + | 2061 | WP_033836507.1 | oligopeptidase B | - |
| PUO96_RS10145 (PUO96_10145) | 2135631..2136290 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| PUO96_RS10150 (PUO96_10150) | 2136369..2136599 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| PUO96_RS10155 (PUO96_10155) | 2136735..2137109 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| PUO96_RS10160 (PUO96_10160) | 2137114..2137983 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| PUO96_RS10165 (PUO96_10165) | 2138000..2138338 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2138437..2138605 | - | 169 | - | - | Antitoxin |
| - | 2138495..2138598 | + | 104 | - | - | Toxin |
| PUO96_RS10170 (PUO96_10170) | 2138723..2139682 | - | 960 | WP_042945476.1 | spore coat protein U domain-containing protein | - |
| PUO96_RS10175 (PUO96_10175) | 2139697..2142027 | - | 2331 | WP_064405637.1 | fimbria/pilus outer membrane usher protein | - |
| PUO96_RS10180 (PUO96_10180) | 2142030..2142794 | - | 765 | WP_049082702.1 | fimbria/pilus periplasmic chaperone | - |
| PUO96_RS10185 (PUO96_10185) | 2142813..2143331 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T272415 NZ_CP117853:2138495-2138598 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT272415 NZ_CP117853:c2138605-2138437 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
